Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0479 ATGGATGGGTACGATAGTGGTGGCGGAAGTGCTGATAAAGCTCCGGAAGCGGAGGAAGAAGGAACCACTCCACCACTTCCTGAGAAGGTTCAAGTTGGCGGTTCGCCTTTATACAGACTCGATAGAAAACTTGGGAAGGGAGGATTTGGACAAGTTTATGTTGGTAGACGTCTAGGAGCTGGTTCCGGTGCCATTGAGGTAGCATTAAAATTTGAGCATAGAAGCAGCAAAGGGTGCAATTATGGACCTCCCCATGAGTGGCAGGTTTACAATACATTAGGCGGTAGTCATGGTGTTCCACGGGTACATTACAAGGGACGGCAAGGTGACTACTATATTATGGTCATGGATATCCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCTATTGAAATGGTGGCGTGTATTGCAATCGAGGCTATCTCCATATTAGAGAAAATGCATTGTAAAGGATACGTGCATGGTGATGTAAAACCTGAAAACTTTTTGCTTGGACCCCCGGGAACCCTTGATGAGAAAAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGTTGGCGTGATAGTTCAACTGGCCTTCATGTTGATTATGATCAACGCCCAGATGTGTTCAGGGGCACAGTTCGTTACGCTAGTGTGCATGCACATCTTGGTAGAACAGGTAGCAGGAGAGATGATTTGGAATCTCTTGCTTTCACGCTTGTCTTCCTTCTTCGTGGTCGGTTGCCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAAATGGCAACTTCTCCCGAAGCTTTGTGTTGCTTTTGTCCCGCACCTTTCCGGCAGTTTGTTGAACATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAGTATATATCCCTTTTTGATGGAATTGTGGGTCCAAATCCTGACATTAGGCCAATAAATACCGAGGGTGCGCAGAAGCTTGTATGCCAAGTTGGACAAAAGAGAGGACGATTCACAATGGAAGAGGATGACAATGAACAGCCAAAGAAGAGGGTCCGAATGGGAACGCCGGCAACACAGTGGATTAGTGTTTACAATGCTCGGAGACCAATGAAACAAAGGTATCATTACAATGTGGCTGATGAGCGGCTCTCCCAACATATTGAAAAAGGGAATGAAGATGGTTTATTTATCAGTAGCGTGGCTTCTTGTGCTAGTCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACAGCACAAGTTTATGAACTGTCTTCCAGTTTTCTTCACAAGGAATGGATTATGGAGCAGTGGGATAATAATTACTACATCAGTGCCATAGCTGGAGCTTGTAATGGGTCCTCATTGGTTGTAATGTCAAAAGGGACCCAATACATGCAACAATCCTATAAAGTTAGCGACTCATTTCCATTTAAGTGGATCAACAAAAAATGGAAAGAAGGATTTTTCGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCTCGTGGAGTTGGATTCTCAGACCAGGTTGTGGAACTTGATTTCCTGTACCCCAGTGAAGGTATTCATCGAAGGTGGGAAAACAATTACCGTATCACCGCAACTGCTGCGACGCCTGATCAGGCTGCTTTTATTTTAAGTGTCCCTAGAAGAAAACCAACTGATGAAACACAAGAAACACTTCGCACGTCTGATTTTCCAAGTACTCATGTTAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTAGTTATGGGAGAACAGTTTCATAA 1797 0.438 MDGYDSGGGSADKAPEAEEEGTTPPLPEKVQVGGSPLYRLDRKLGKGGFGQVYVGRRLGAGSGAIEVALKFEHRSSKGCNYGPPHEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDILGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHCKGYVHGDVKPENFLLGPPGTLDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAFTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCFCPAPFRQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLVCQVGQKRGRFTMEEDDNEQPKKRVRMGTPATQWISVYNARRPMKQRYHYNVADERLSQHIEKGNEDGLFISSVASCASLWALIMDAGTGFTAQVYELSSSFLHKEWIMEQWDNNYYISAIAGACNGSSLVVMSKGTQYMQQSYKVSDSFPFKWINKKWKEGFFVTAMATAGTRWAIVMSRGVGFSDQVVELDFLYPSEGIHRRWENNYRITATAATPDQAAFILSVPRRKPTDETQETLRTSDFPSTHVKEKWAKNLYIASISYGRTVS* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0479 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Psa5g0479 598 SUPERFAMILY Protein kinase-like (PK-like) 38 311 IPR011009 -
Psa5g0479 598 Gene3D Transferase(Phosphotransferase) domain 1 10 357 - -
Psa5g0479 598 ProSiteProfiles Protein kinase domain profile. 38 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0479 598 CDD STKc_CK1 38 307 - -
Psa5g0479 598 Pfam Protein kinase domain 38 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0479 598 ProSitePatterns Protein kinases ATP-binding region signature. 44 70 IPR017441 GO:0005524
Psa5g0479 598 PANTHER - 15 572 - -
Psa5g0479 598 PANTHER CASEIN KINASE-RELATED 15 572 - -
Psa5g0479 598 MobiDBLite consensus disorder prediction 1 32 - -
Psa5g0479 598 SMART serkin_6 38 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0479 Psa-Chr5 38263682 38270872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0479 43 307 MAP Kinase Kinase Kinase AT5G50180 23.741 3.04e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Psa5g0479 Pkinase 8.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0479 - - gmx:100800125 1119.76