Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0437 ATGAACTTCAACAATTTTTTCTTGTTCTTCCTGTTGCAATTCATCTTAATTCTTGGTTGCAGTAGTTCAGGAGTGCGATTGGATATTCAAGAAAAACATGTGATAATTGATAATGGCATAGTCCAAGTTAATATATCAAATCCAGAAGGACATGTCATTGGAATTCAATATAATGGAATTGATAATTTGCTTGAAGTTCAAAATAAAGAATCTGACAGAGGGTACTGGGATATTGTATGGGAGCAAGATGAGGAAAAAAGAACTGAAAAAGGAACAAAGAAAAAGGGAACATTGGACAGGATGGAAACAAATAATTTGACGGTGATAGTGGAAAATGAAGAACAAGTAGAGTTATCTTTCACTAGAATATGGAATTTCTCTCTTGAGGGAAAGTTTGCACCACTCAATTTTGATAAAAGGTTTATAATGCTTCGTGATTCTTCTGGATTTTATACATATGCAATTTATGAGCATTTGAAGGAATGGCCAGCTTTTGATCTTGATAATACTAGGGTTGCATTTAAGCCTAGAAAAGATAAGTTCAATTATATGGTTATAGCGGACGACAGACAAAGATTTATGCCTCAGTCGGACGATCGATTACCAGAAAGAGGCGAAGTTCTAGCTTATCCAGAGGCCGTCCGACTTGTCAATCCAGTGGAACCGGAGTTTAAAGGAGAGGTCGATGATAAATATGAGTACTCAATTGAGAGTAGAAAAAACCAAGTTCATGGATGGATTTCCATTAATTCGTCATCGGAATCGGAATCGAAATCGAAATCAACTGGATTCTGGATAATTACTCCTAGCAATGAATTCAGATCTGCTGGACCCTTAAAGCAATACCTTGCTTCCCACGTTGGGCCTACTTCACTATCTGTATTTCATAGTACACATTATTCAGGAGCAGATTTGATCATGAAATTTGGAGTAAATGAGGCATGGAAGAAAGTTTTTGGGCCTATATTTATATATCTTAACTCCAACTCTGATGGGCTTAGCCCAATCAACCTCTGGGAGGATGCCAAACACCAGATGGTGAATGAAGTCGAAAGGTGGCCCTATACATTTCCTGCTTCAAAGGAGTTTCTCTCATCTGATCAAAGAGGTAAAGTTGAAGGTAGATTGCTTGTTCGAGATAGTGATACATTTGTTCCTGTCAAAGGCGCTTACGTGGGATTAGCACGCCCGGGAGATGTTGACTCATGGCAAAGAGAATGCAAGGGTTATCAATTCTGGACTATTACTGATGATAAAGGCTATTTCTCAATTATTAACATACTTCCTGGTGACTATAATCTGTATTCTTGGGTTAATGGATTCATAGGAGATTATCAATATAACAAAGTCATTAACATAACCTCAGGTAGTGAAATTAAAGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGGAGATAGGTATCCCGGATCGCTCGGCCGCCGAGTTTTATGTTCCCGATCCGAATCCTTTGTACGTGAACAAACTTTACTTCAACCATTCCGACAGGTATAGGCAATATGGTTTATGGGAGAGATATGCTGAATTATATCCAAAAGAAGATCTAGTTTACAATGTTGGCACTAGTGATTACAAAAAAGATTGGTATTTTGCTCAGAATACCAGGAAAAAAGACAACAACACTTACGAAGGAACAACATGGCAAATTAATTTCAATCTCGACCGTGTGAATATCAATGGTACATACAAATTGCGATTAGCTCTGGCATCTGTTCATTTTGCGGAGTTACAGGTTCGCATAAACAATGCAGATGCAAATCCACCTTTGTTTAGAACTGAAATTATTGGAAAGGATAATACTATAGCAAGACATGGAATTCATGGAATGTACAGGTTATTCAATGTTGATGTTCAAGGCAGACTTCTTGTGAATGGGAACAATACCATCTTTCTAACACAAGCTGCCAGCAATGGTCCTTTTGTAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCTCTCAAATGTGA 2007 0.3792 MNFNNFFLFFLLQFILILGCSSSGVRLDIQEKHVIIDNGIVQVNISNPEGHVIGIQYNGIDNLLEVQNKESDRGYWDIVWEQDEEKRTEKGTKKKGTLDRMETNNLTVIVENEEQVELSFTRIWNFSLEGKFAPLNFDKRFIMLRDSSGFYTYAIYEHLKEWPAFDLDNTRVAFKPRKDKFNYMVIADDRQRFMPQSDDRLPERGEVLAYPEAVRLVNPVEPEFKGEVDDKYEYSIESRKNQVHGWISINSSSESESKSKSTGFWIITPSNEFRSAGPLKQYLASHVGPTSLSVFHSTHYSGADLIMKFGVNEAWKKVFGPIFIYLNSNSDGLSPINLWEDAKHQMVNEVERWPYTFPASKEFLSSDQRGKVEGRLLVRDSDTFVPVKGAYVGLARPGDVDSWQRECKGYQFWTITDDKGYFSIINILPGDYNLYSWVNGFIGDYQYNKVINITSGSEIKVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPLYVNKLYFNHSDRYRQYGLWERYAELYPKEDLVYNVGTSDYKKDWYFAQNTRKKDNNTYEGTTWQINFNLDRVNINGTYKLRLALASVHFAELQVRINNADANPPLFRTEIIGKDNTIARHGIHGMYRLFNVDVQGRLLVNGNNTIFLTQAASNGPFVGILYDYIRLEGPSQM* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0437 668 Pfam Polysaccharide lyase family 4, domain III 474 662 IPR029411 -
Psa5g0437 668 CDD RGL4_M 368 464 IPR029413 -
Psa5g0437 668 CDD RGL4_C 476 663 - -
Psa5g0437 668 Gene3D - 472 663 - -
Psa5g0437 668 Gene3D - 365 461 - -
Psa5g0437 668 SUPERFAMILY Galactose-binding domain-like 471 663 IPR008979 -
Psa5g0437 668 SUPERFAMILY Starch-binding domain-like 365 461 IPR013784 GO:0030246
Psa5g0437 668 Pfam Polysaccharide lyase family 4, domain II 388 460 IPR029413 -
Psa5g0437 668 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 664 - -
Psa5g0437 668 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 664 - -
Psa5g0437 668 CDD RGL4_N 33 331 - -
Psa5g0437 668 Pfam Rhamnogalacturonate lyase family 24 228 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0437 Psa-Chr5 35814997 35818730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0437 21 668 Polysaccharide Lyase AT1G09880 61.315 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0437 K18195 - gmx:100786488 1052.35