Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0436 ATGTCTACACAAGGGGTGCAACTCATCCTTCAAGATCATCATGTGGTGATGGACAATGGCATACTAAGAGTCACTTTATCAAATCCTGATGGAATTGTCACTGGAATAGAGTATAATGGCATTGACAACTTGCTTGAAGTCTTGAATGAAGAATCTAATAGAGGGTATTGGGATCTTGTTTGGAGCTCTCCAACAAGTACAGGAACCACCGGAATATTCGATGTGATAAAGGGAAGTACATTCAAAGTTATATTGGAGAATGAAGATCAACTTGAGTTATCCTTCTCTAGGACTTGGGATACCTCCCTAGAGGGCAAGTTGGTTCCATTAAATATCGATAAAAGGTTTATAATGCTTCGCGGTTCTTCCGGCTTCTACTCCTATGGAATTTATGAACACTTGGAGGATTGGCCTGCTTTTAATCTTGATGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTCCATTATATGGCAATGGCAGATAATAGACAAAGGAATATGCCTCTTCCAGATGATAGAGTACCACCAAGAGGCCAACCACTTGCCTATCCAGAAGCAGTTCTACTTGTCAATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTACCAATATTCATGTGACAACAAAGATAGTCAAGTTCATGGATGGATTTGCAAGGATCCTGCTGTTGGATTCTGGCTCATTACACCTAGCAATGAGTTTCGATCGGGTGGACCCGTCAAACAAAACTTAACTTCTCACGTGGGACCTACCACGCTTGCCGTGTTTCTTAGTGCGCATTATAGCGGAGAGGATTTAGTGCCAAAATTCAAAGCTAATGAAGCATGGAAAAAAGTTTTTGGTCCAGTTTTTATCTATGTCAATTCTCCATATAATGAAGATGATGACCCAATTAAGCTATGGGATGATGCTAAACTTCAGATGCTAGTCGAAGTTCAAAGTTGGCCCTACAATTTTCCCGACTCCGATGATTTTCCAAAATGGGACGAACGTGGTAACGTTTGTGGCAGATTAATGGTTAAAGAGAGGTATATAGATGATGATGATGATTATTTATCAGCAAAATATGCTTATGTTGGCTTGGCTACACCAGGAGATGTAGGATCTTGGCAAAGAGAATGCAAAAATTATCAGTTTTGGACTCAAGCGGACGATGATGGCTATTTCTCTGTCAGCAATATTCGTGTCGGGGACTATAATGTTTATGCATGGATACCTGGTTTTATTGGTGATTATAAGTATGATGTAGTAATTACCATAACAGAAGGTTGTGACATAGATATTGGCGATCTTGTTTATGAGCCACCAAGAGATGGACCAACATTGTGGGAAATAGGCGTCCCCGATCGATCGGCTGCTGAGTTCTATGTTCCCGATCCAAATCCGAAATATATCAACAAATTATATGTTGATCATCCTGATAAGTTTAGGCAATATGGGATATGGGAGAGATATGCAGAACTATACCCTGAAAAAGATTTGATCTACACTATTGGTGTTAGTGACTACACCAAAGATTGGTTCTATGCTCAAGTTACTAGGAAGAAAGAAGATAATAAATATCAAGGAACCACTTGGCAAATCAAGTTTAATCTTGATAATGTGAACAAAAAAGAAAGCTATAAACTTCGAATCGCTTTGGCATCAGCTACATATTCAGAACTTCAGGTACGAGTTAATGACCCGAAAGCGAATCGCCCGATATTTTCAAGTGGGTTGATAGGAAAGGATAACTCAATTGCTAGACATGGAATTCATGGACTTTATTGGCTTTACAGTATTGACATACAAGGTTCTTTACTTGTTGAAGGAGATAACAATACCATCTTTTTGACACAAACAAGAAGCAATGGTCCATTTCAAGCCATTATGTATGATTATATTCGTTTGGAAGGTCCAGCAAATTCTAGTTTCACTAAGAAAATTTGA 1944 0.3873 MSTQGVQLILQDHHVVMDNGILRVTLSNPDGIVTGIEYNGIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGIFDVIKGSTFKVILENEDQLELSFSRTWDTSLEGKLVPLNIDKRFIMLRGSSGFYSYGIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQPLAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICKDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKANEAWKKVFGPVFIYVNSPYNEDDDPIKLWDDAKLQMLVEVQSWPYNFPDSDDFPKWDERGNVCGRLMVKERYIDDDDDYLSAKYAYVGLATPGDVGSWQRECKNYQFWTQADDDGYFSVSNIRVGDYNVYAWIPGFIGDYKYDVVITITEGCDIDIGDLVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPKYINKLYVDHPDKFRQYGIWERYAELYPEKDLIYTIGVSDYTKDWFYAQVTRKKEDNKYQGTTWQIKFNLDNVNKKESYKLRIALASATYSELQVRVNDPKANRPIFSSGLIGKDNSIARHGIHGLYWLYSIDIQGSLLVEGDNNTIFLTQTRSNGPFQAIMYDYIRLEGPANSSFTKKI* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0436 647 CDD RGL4_M 335 436 IPR029413 -
Psa5g0436 647 Pfam Rhamnogalacturonate lyase family 11 203 IPR010325 -
Psa5g0436 647 SUPERFAMILY Starch-binding domain-like 372 432 IPR013784 GO:0030246
Psa5g0436 647 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 641 - -
Psa5g0436 647 Gene3D - 7 297 IPR014718 GO:0030246
Psa5g0436 647 Gene3D - 444 636 - -
Psa5g0436 647 CDD RGL4_N 8 294 - -
Psa5g0436 647 Pfam Polysaccharide lyase family 4, domain II 360 432 IPR029413 -
Psa5g0436 647 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 641 - -
Psa5g0436 647 Gene3D - 335 432 - -
Psa5g0436 647 SUPERFAMILY Galactose mutarotase-like 13 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Psa5g0436 647 CDD RGL4_C 448 636 - -
Psa5g0436 647 SUPERFAMILY Galactose-binding domain-like 443 636 IPR008979 -
Psa5g0436 647 Pfam Polysaccharide lyase family 4, domain III 446 635 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0436 Psa-Chr5 35666968 35670583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0436 1 639 Polysaccharide Lyase AT1G09890 71.250 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0436 K18195 - gmx:100814721 1188.33