Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0435 ATGGAGTTTTATGATGGAGATTTCATGGAGGAATTAATGGCTCTAAGAACAGAAACTCCAACTCAAGAACAAAATCAATTCTTCTCATCATCAACTAACAACAACAGCTTGAGTTTCGAAAACTTTTTCGATCAAAACTCTTGTTCTAATCAACAACTCTTTCCTCAAAGCTACATCAACAATGATTACTACACCAACAGTAACAGTTTCAATGAAATCTATGATTCATTACTTCAAGAATCTTCAACACCTCAGATTCTTGATTCATATTATAGTAATAACACACTCGACGCGCCGTTTGTTTCTCAAGATTTTCCGTTGTCCATGATTGGAGAAGAAGAGGATCAAAGTATGCTCGGCGAAGAGATTAAGAATTTGGAGCTGCAAACAACGTGCAAAATGGAGGAAACACAATCACCTGAAATGCCGGTAGTTTTCAACGCAGGAAACAGTTTGGAGAGAAAGAATCGGTCGAAGAAGCTTCAAGGACAACCGTCGAAGAATTTAATGGCGGAAAGGAGACGACGAAAGAGATTAAACGATCGATTATCGATGCTACGAGCAATTGTGCCTAAGATAAGCAAGATGGATCGAACGGCTATACTTGGAGATACTATTGATTATATGAAAGAGCTTCTAGAGAAAATCAACAATCTCCAACAAGAAATTGAACTAGATTCAAACATGTCAAGCATTATCAAAGATGTAAAGCCAAATGAAATCTTAATAAGAAACTCTCCAAAGTTTGCGGTGGAGCGAGGCCTAGACACCAGGGTTGAAATTTGTTGTGCAGGGAAGCCTGGGTTATTGCTATCCACAGTGAACACATTGGAAGCATTAGGTCTTGAGATTCAACAATGTGTTATAAGTTGTTTCAATGAGTTCACAATGCAAGCTTCTTGCTCAGAGGAATTTGAGAGAAGTACAATGTTGAGTTCCGAAGATATTAAGCAAGCTTTATTTAGAAGTGCGGGCTATGGAGGAAGATGTTTGTGA 996 0.3825 MEFYDGDFMEELMALRTETPTQEQNQFFSSSTNNNSLSFENFFDQNSCSNQQLFPQSYINNDYYTNSNSFNEIYDSLLQESSTPQILDSYYSNNTLDAPFVSQDFPLSMIGEEEDQSMLGEEIKNLELQTTCKMEETQSPEMPVVFNAGNSLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMSSIIKDVKPNEILIRNSPKFAVERGLDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNEFTMQASCSEEFERSTMLSSEDIKQALFRSAGYGGRCL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0435 331 PANTHER DNA BINDING PROTEIN 4 331 - -
Psa5g0435 331 Gene3D - 171 245 IPR036638 GO:0046983
Psa5g0435 331 SMART finulus 169 218 IPR011598 GO:0046983
Psa5g0435 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Psa5g0435 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 225 IPR036638 GO:0046983
Psa5g0435 331 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Psa5g0435 331 CDD ACT_UUR-ACR-like 257 298 - -
Psa5g0435 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 331 - -
Psa5g0435 331 Coils Coil 202 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0435 Psa-Chr5 35594649 35597110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0435 134 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 60.891 1.31e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g0435 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0435 - - cam:101489960 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0435 5 35594649 35597110 Psa5g0435 5 35594649 35597110 ECH