Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0417 ATGGGTACTGGATGGAGGAGAGCCTTTTGTACACGAGACCCTGAATCTACTATATCAGATAACAAGAAGAACCGAAGCCCAAGCCCAAGCCCGAGAAGCTGTGCTCGGTTGAGTTTTCTTTCCGGAGGCACTCCACGGTTGAATCAATCTCAACCAGCTTCAAGTCCAAGTCTGCGATGTCGTACAATAACTGAAGCAGCTTCTCAAACAAATGATAGCCCCAGATTTCAAAGCAAAACTAACACTCCAAGGGCAACCAAATCTCCTAAAGCAAACTCAGTATCGAATCCAAATTCTCCTCGCTCACCTTTGAAGTTATCTCTCTTCAAAAACAGCTTCAAATTCAGGAGTAGCTGCGGAATCTGTTTGAATAGTGTGAAAACGGGGCAGGGAATGGCGATTTACACGGCAGAATGTGCACATGCTTTTCATTTCCCGTGCATCGCAGCACATGTGCGCAACCATGCTACTCTCGTTTGCCCCGTCTGTAACGCCACATGGAAAGACGTTCCGCTGCTAGCGGCGCACAAGAATCTCGCTGCTCCACAGTCTCATACAACCGATGATAATTCCAATGCACGTGATTCAAAACAAACGGAAAATCCTTCTCCGGTTTTCAGAACCAAGAACTTGAATCAGTCTCAGCAACAACAACAACTTCAACAACCAAAGCTATCTGAATCAACGAGATCTTACGACGATGATGAGCCTCTCCTTTCTGCTAACGCCGGTGGTGGAAGGATTATCACTATTCCTGAAGTTGATGAAAACGAAGAAGACGAAGAGGATGACAACGGTGAGTTTCAAGGATTTTTCGTTAACACGAAATCTACTTCGTCTAACAAATCTTACTCAGACGATATACAATCCGCTGACGGAGATTCAAGAACTGTTCAGGTGAAGTTAATGCCAGAGTGTGCAGTCGTATCAGTTTCCCGAACACACGAAACATACGCTTTGGTTTTAAAAGTGAAAGCACCACCGCCGCTCCGCGGCGGAAGCAGCACTCTGGATCCCTCACGGCGAGCGCCGATAGATCTCGTTACGGTGCTAGATGTTGGTGGAAGCATGAGCAGTGCAAAGCTTCACATGCTAAAACGCGCGATGCGTTTGGTTATATCCTCTCTAGGACCAGCTGATAGACTTTCGATTGTGGCTTTTTCCGCTATTTCCAAACGACTCTTACCATTGAGAAGAATGACGGCTCAAGGTCAGCGTATGGCTCGGCGCATCATCGACCGGCTTGTCACCGGTGAAGGAAACAGTTTGGGTGAGGCTTTGAGGAAAGCAACAAGAGTATTGGAAGATCGTAGAGAAAGAAACCCGGTTGCTAGCGTCATGCTATTATCCGATGGTCAAGATGAAAAGGTTCATAACAGTAACAAACAAAATCAACGGAAGACATGGAGCCACGCATCTTCGACCCGGTTCGCTCACATTGAAATACCGGTTCACGCATTTGGGTTTGGTAGTAAAACCGGTTACAGCCACGAACCGGGGGAGGATGCTTTTGCCAAATGTATCGGTGGGCTTTTGAGTGTTGTAGTTCAGGACTTGAGAATTCAATTGGGCTTTCAGTCTGATTCAGCCCGGGCCGAAATTAGTGCTATCTATTCCTGCAGCGGAAGGCCCACGCTACTGAGCTTAGGAGCCGTACGGCTCGGCGATTTATACGCTGAAGAAGAAAGAGAGCTATTGGTTGAGATGAGAGTTCCAGCTTCAGTTTTGGGTGCGGGGACCCACCATATGATGACGGTACGGTGTCTTTATAAGGACCCCGCAAGTCAAGAGATAGTATACGGTAGAGAACAGGGACTTACAGTGCAGCTACATCAGAACCAGTCTCAGACGGTACGATCATCACAAACCAGGATCGAAAGGCTGAGGAACCTGTTCATAACTACGCGAGCCATAGCTGAGTCAAGGAGGCTTCTAGATCATAACAGTGACTACACCGGCGTCATCATTTACTCTTCGGCTCGTGCGCTTTTGATTCAATCTGGCTCGGTTTCGGCTGAACAGTACGTGCGCGGCTTGGAAGCGGAGCTTGCAGAGCTTCATTGGAGGAGACAGCAAGAACAGGTTCATGTTGAGGCTCAGCAGCAACAAGTGATGCAAAGAAGAAGAGGAGTTGAAAGAGATATGAATAATAATATGGTGGATGAAAATGGTGAGCCGCTTACACCTACATCGGCTTGGAGAGCGGCTGAGATGCTGGCTAAGATGGCTATGGTCAAGAAGTCTTTGAATAAAGTCAGCGATTTACACGGCTTCGAAAATGCTAGGTTTTAA 2292 0.4734 MGTGWRRAFCTRDPESTISDNKKNRSPSPSPRSCARLSFLSGGTPRLNQSQPASSPSLRCRTITEAASQTNDSPRFQSKTNTPRATKSPKANSVSNPNSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGMAIYTAECAHAFHFPCIAAHVRNHATLVCPVCNATWKDVPLLAAHKNLAAPQSHTTDDNSNARDSKQTENPSPVFRTKNLNQSQQQQQLQQPKLSESTRSYDDDEPLLSANAGGGRIITIPEVDENEEDEEDDNGEFQGFFVNTKSTSSNKSYSDDIQSADGDSRTVQVKLMPECAVVSVSRTHETYALVLKVKAPPPLRGGSSTLDPSRRAPIDLVTVLDVGGSMSSAKLHMLKRAMRLVISSLGPADRLSIVAFSAISKRLLPLRRMTAQGQRMARRIIDRLVTGEGNSLGEALRKATRVLEDRRERNPVASVMLLSDGQDEKVHNSNKQNQRKTWSHASSTRFAHIEIPVHAFGFGSKTGYSHEPGEDAFAKCIGGLLSVVVQDLRIQLGFQSDSARAEISAIYSCSGRPTLLSLGAVRLGDLYAEEERELLVEMRVPASVLGAGTHHMMTVRCLYKDPASQEIVYGREQGLTVQLHQNQSQTVRSSQTRIERLRNLFITTRAIAESRRLLDHNSDYTGVIIYSSARALLIQSGSVSAEQYVRGLEAELAELHWRRQQEQVHVEAQQQQVMQRRRGVERDMNNNMVDENGEPLTPTSAWRAAEMLAKMAMVKKSLNKVSDLHGFENARF* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0417 763 ProSiteProfiles VWFA domain profile. 346 491 IPR002035 -
Psa5g0417 763 SMART ring_2 119 163 IPR001841 -
Psa5g0417 763 CDD vWA_C3HC4_type 345 516 - -
Psa5g0417 763 Pfam RING-like zinc finger 119 148 IPR001841 -
Psa5g0417 763 SUPERFAMILY vWA-like 344 518 IPR036465 -
Psa5g0417 763 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 763 - -
Psa5g0417 763 MobiDBLite consensus disorder prediction 39 58 - -
Psa5g0417 763 SMART VWA_4 344 531 IPR002035 -
Psa5g0417 763 MobiDBLite consensus disorder prediction 196 227 - -
Psa5g0417 763 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 763 - -
Psa5g0417 763 Pfam von Willebrand factor type A domain 346 490 IPR002035 -
Psa5g0417 763 ProSiteProfiles Zinc finger RING-type profile. 119 164 IPR001841 -
Psa5g0417 763 MobiDBLite consensus disorder prediction 181 264 - -
Psa5g0417 763 MobiDBLite consensus disorder prediction 1 34 - -
Psa5g0417 763 CDD RING-H2 119 164 - -
Psa5g0417 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 174 IPR013083 -
Psa5g0417 763 Gene3D von Willebrand factor, type A domain 346 509 IPR036465 -
Psa5g0417 763 SUPERFAMILY RING/U-box 113 169 - -
Psa5g0417 763 MobiDBLite consensus disorder prediction 65 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0417 Psa-Chr5 33953947 33958523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0417 111 266 C3H Transcription Factor Family AT3G03550 25.466 1.48e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0417 - - lja:Lj3g3v3131860.1 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0417 5 33953947 33958523 Psa5g0417 5 33953947 33958523 ECH