Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0411 ATGCCTGTCAAAGATTTCTCACCTCAAAGAAATCGGAGACATCCTCCACCGCTTCCACAGTTCATGAATTTGAATGTCAATCCCGTGGATAAGAGAACTGCTTTGACTTACATTGATAGCAATGGAAATTGGCACCGTGCAAGCAAAGGTGCTCTAGAGCAGATCATGAACCGCCACAGGAGGTTCCTGAGAAAACTAAAGAAAGCGCTGGTGGTCCTTGGCAGTTTGTTGGTTTGTTGTCGCTGTTTGACCCCACCTAGGCATGACAGTGCTGAAACTATTCGGAGAGCTCTTCAGCTTGGTGTCAATGTTGAGATGATTACTGGTGATCAACTTGCCATAGCAAAGGAGACTGGGGGGAGACTTTGGATGAGAACTAATATGTACCCATCTGCTACCTTTCTTGGACAAGACAAAGATGCGAGTATTGCAACGGTTATGGCAAGGAACTGGACAAGCAAGTAA 465 0.4581 MPVKDFSPQRNRRHPPPLPQFMNLNVNPVDKRTALTYIDSNGNWHRASKGALEQIMNRHRRFLRKLKKALVVLGSLLVCCRCLTPPRHDSAETIRRALQLGVNVEMITGDQLAIAKETGGRLWMRTNMYPSATFLGQDKDASIATVMARNWTSK* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0411 154 PANTHER CALCIUM-TRANSPORTING ATPASE 24 58 - -
Psa5g0411 154 PANTHER CALCIUM-TRANSPORTING ATPASE 83 147 - -
Psa5g0411 154 PANTHER PLASMA MEMBRANE ATPASE 83 147 - -
Psa5g0411 154 PANTHER PLASMA MEMBRANE ATPASE 24 58 - -
Psa5g0411 154 Gene3D - 84 144 IPR023214 -
Psa5g0411 154 SUPERFAMILY HAD-like 82 126 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0411 Psa-Chr5 33222434 33222994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0411 24 146 Primary Pumps ATPases AT2G18960 56.579 4.09e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0411 K01535 - gmx:100804422 146.747