Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0402 ATGGCTTCAAGCTCAAATTGGACAGCAAAACAAAACAAAAGATTTGAGAATGCACTAGCAATGTTGGAGAAGGACACTCCAGATCGTTGGCAGAAGGTGGCTAGAGCTGTGGGAGGAAAGACAGTAGAAGAAGTGAAAAGACATTATGAGAAGCTTGTTGAAGATGTGAAGCTGATTGAGGAAGGACATGTTCCACTGCCCAAATACACAAATAATGGTTGCAGTTACATGATGGATCAACAAGATAAAAGGATGAAGGCTCTAAGTCTCCAGTAA 276 0.413 MASSSNWTAKQNKRFENALAMLEKDTPDRWQKVARAVGGKTVEEVKRHYEKLVEDVKLIEEGHVPLPKYTNNGCSYMMDQQDKRMKALSLQ* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0402 91 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Psa5g0402 91 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Psa5g0402 91 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Psa5g0402 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 91 - -
Psa5g0402 91 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Psa5g0402 91 CDD SANT 6 53 IPR001005 -
Psa5g0402 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 91 IPR044636 GO:0003700
Psa5g0402 91 Gene3D - 1 66 - -
Psa5g0402 91 SMART sant 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0402 Psa-Chr5 32282349 32283325 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g0402 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0402 - - gmx:100794970 138.272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0402 5 32282349 32283325 Psa5g0402 5 32282349 32283325 ECH