Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0397 ATGGGTTGGACAGGAGAAGAGAACAGACGTTTTGAGGATGCACTTGCTGTATATGGTCCAGAAGATCCAAATCGGTGGCAACATGTGGCTAACGCTGTTGGTGGAAAATCAATACAAGAAGTTCGAAGGCATTATGAAATCCTCAAAGAAGATCTCATTCGAATCGAACGTGATCAAGTTCCGCTACCAACTTATAGGGGAGGAGGTTCTTCTGGTATCAATATCAACAACACCAGAAGACAGTTAATTGCTGATGAACAAAGGAGAATGAGGAATCTTAATATCCGTTGA 291 0.4192 MGWTGEENRRFEDALAVYGPEDPNRWQHVANAVGGKSIQEVRRHYEILKEDLIRIERDQVPLPTYRGGGSSGININNTRRQLIADEQRRMRNLNIR* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0397 96 SMART sant 3 51 IPR001005 -
Psa5g0397 96 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Psa5g0397 96 CDD SANT 3 49 IPR001005 -
Psa5g0397 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 66 - -
Psa5g0397 96 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Psa5g0397 96 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Psa5g0397 96 Gene3D - 2 50 - -
Psa5g0397 96 Coils Coil 38 58 - -
Psa5g0397 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 66 IPR044636 GO:0003700
Psa5g0397 96 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Psa5g0397 96 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0397 Psa-Chr5 32221258 32222544 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g0397 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0397 - - gmx:100789698 146.362