Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0378 ATGGAATCTACAAATCTCCATCATCTCCAAGACCAACAACCTCCTCTTCCTGTTTCTTCTTTATCTTCTTCTATCCCATCTTCTTATGCTGTTGGAGGAGGAACCACCACCATCCACTCTTGGACCCCAACAAACATCACTTTGAATAATGCTGCAGGTAACTTCAACTCAAATCTCCAAGAAGTTAATCCGAGATATTCGAGATCAAGCGCGATGATTCAAGGTTTAGGTTATCATCATCATCATCATCAATGGACAAATGATGATGTTAACAGAAACCATGAGTCAGATTGTGTTAAGGAAGAGATTTCATTTGCGAGTTTTCCTAAATTTACTGAAATGCTTAATTACACTCCTCCGAATTCAAACATGGAGAACTATGGAATACTTGATGATTCTTCCACTACAATACAGATGAAGAATAGTACTAATGATGAACACAAGGATATGAATGCTCTCATGCTCAAGAATCTTTACACTGGTGGAGACTTTTATAATGCTCAAAATTATCATAACATTAATGGTAGCCAGATTCACCCTAGTATAAATATCTCGAACTTGAATCATTACTCGTCTTCGTCTACCACCTCAACCTTGGACATGAACATGCAGTCATTAGATCTACTAACTAATTCACAAGATCATCATCTTGGTAGATTTAGTACTAATGATCATGAAAACCTTTCTTTTCATCTTCATCCTATGCAGAACGAACTCGCAAACAGATCCTCTTCTAGTAACTCCATTAATAAGCCGTCGCTACTCAGCAATGGTGGCGGAGAAACAAAGAGAGTGATGCAATCGAAGGCTTCTCAATCGGAAACGGCATTGAAGAAATCACGATCTTCATCAGAATCACGACCGCCTTCGTGTGCACCCTTTAAGGTTAGGAAAGAAAAATTAGGAGATAGGATTGCGGCTCTTCAACAGTTGGTGGCTCCTTTTGGAAAGACTGACACTGCATCTGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTAGAGACACTAAGTGTTCCCTATATGAAGTCATCACAAAACCAAAACAACATATTGATGCAAGGGGATTCGGCCATAGGTGACACAAATGGAGAAGCAAAGCAATATCTGAGAAGTCGAGGACTGTGTCTCGTGCCATTGTCATGCATGTCATACATAGCAGGTGATGGGAGCACTGAGGGGTGGCAACAACGCCCGAACTTTGGTGGACCAGCTTGA 1230 0.4049 MESTNLHHLQDQQPPLPVSSLSSSIPSSYAVGGGTTTIHSWTPTNITLNNAAGNFNSNLQEVNPRYSRSSAMIQGLGYHHHHHQWTNDDVNRNHESDCVKEEISFASFPKFTEMLNYTPPNSNMENYGILDDSSTTIQMKNSTNDEHKDMNALMLKNLYTGGDFYNAQNYHNINGSQIHPSINISNLNHYSSSSTTSTLDMNMQSLDLLTNSQDHHLGRFSTNDHENLSFHLHPMQNELANRSSSSNSINKPSLLSNGGGETKRVMQSKASQSETALKKSRSSSESRPPSCAPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQNNILMQGDSAIGDTNGEAKQYLRSRGLCLVPLSCMSYIAGDGSTEGWQQRPNFGGPA* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0378 409 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 110 393 - -
Psa5g0378 409 Gene3D - 295 359 IPR036638 GO:0046983
Psa5g0378 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 349 IPR036638 GO:0046983
Psa5g0378 409 PANTHER OS01G0105700 PROTEIN 110 393 - -
Psa5g0378 409 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g0378 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Psa5g0378 409 CDD bHLH_AtbHLH_like 293 342 IPR045239 -
Psa5g0378 409 MobiDBLite consensus disorder prediction 239 289 - -
Psa5g0378 409 MobiDBLite consensus disorder prediction 239 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0378 Psa-Chr5 30337458 30340553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0378 24 407 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 37.389 2.47e-56 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0378 - - mtr:MTR_3g112170 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0378 5 30337458 30340553 Psa5g0378 5 30337458 30340553 ECH