Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0364 ATGTATCCCAACCATTCATTCTCATCAGGGTCCTATGCGGATATGTTCACCGCGAGCCCTCTGTTACCTCACAACTACTACAATGAATCTGTAGGAGAACAAAATGAGACAGTGACTATGCAGTCCATTGATCAACATTCCAATCCTTGCAACTCTCATTTAGATTGTGAGCAAAATATGCAATGCCAAGGGTTATCTCTTAGTCTAGGGACACTATTGCCTTCTACATCATCTATCCCTCCGTTTCAATACCCATATCACGACACTGGTTTTGTATCACTGAAGAATAATTCTTGTCTTCCAAAGGGACCTATAATGTCTAATGATGATCCGTTGAAAAGTGCTGAATGTATGGCATCTATATCTTGTGGAGGCGGCTTTCATGACATTACCAAACAGGAAAGTTTTCACGACTATCACCCTTCAGATCAATTTCTGCAGGGCTCGTCGTCGGGATTTTCTAACATTTTCTTAAACCCCCAATATCTTAAGGCTGCACAGGAGTTACTTGATGAGCTTGTTAATGTCCGAAAGCAACGTGGAATGGGAAAACAAGAAAAAATCCGCGACATTGGATTAAATAACTCCAAAGACACGGATGGAAAATCTACTAGTCAGTCTATGCAAATATCTTCAGGCCCTAATGATTCTAATTCCAATCCTTCTAGTCAATTATCCTCGGCAGAAAGGCAGAATTGGTTGGATAAGAAGACAAAACTTCTGTCCATCTTGGATGAGGTTGATAAGAGATACAGACAATACTGTCATCAAATGCAGATTGTGGTGTCATCTTTGGACATCGTTGCTGGTTGTGGAGCAGCAGAACCATATACTACACTTGCATTGCGAACAATTTCGCGCCATTTTCGTTGCCTGCGTGACGCAATCAGCAGCCAAATTCAAGTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATTCCTCGTCTCCGGTATGTTGATCAACAGCTTAGACAGCAAAAGGAACTTCAGCAGCTTGGTGTTATGCGGCACGCTTGGAGGCCTCAGAGAGGACTTCCTGAAAACTCCGTTTCAATACTCCGTGCTTGGCTCTTTGAGCATTTCCTTAATCCTTACCCCAAGGATTCAGAGAAAATAATGCTATCTAGGCAAACTGGTTTAACAAGGAATCAGGTGGCGAATTGGTTCATTAACGCGCGTGTGCGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAATTTGGTGATTCTGAGATAAACTACAATAATTCATCTGAAAATCCACTCATGCAAGGTAAAAGAGATTATTATACTGAAGAAATTGAGTCACAGGACAATGTACAAACTATTACTATTGATAGCGTACAAGCCTGTTCCACTAAAGAACATGTAGAAAAAAATGTGATGGATTATGAAAGTAGAAAATTGCATGGTGGTAACAAAAGGTTCAGCTTGAAAAATGGCTTTTATTCAGAAATAACTTGTGATACTGCCACATATGATTTATCAGAGTTGGGTGGTGGCCACCAACAACAACAACAACATGTCTCTCTTTCATTGGAGTTGAGGAACTGTGAAAGCGATGGGTTAGTCATATCAGATGATGCCAATCACAAAAGACACAACAACAATAATAATATTAATAATCAGATATTGTCTTCTTCTTCTTCACAGAGTACTGATATGCTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACAGGTTTGGCAATACTCATTTGTTGCATGAGTTTGTCGTATGA 1752 0.4007 MYPNHSFSSGSYADMFTASPLLPHNYYNESVGEQNETVTMQSIDQHSNPCNSHLDCEQNMQCQGLSLSLGTLLPSTSSIPPFQYPYHDTGFVSLKNNSCLPKGPIMSNDDPLKSAECMASISCGGGFHDITKQESFHDYHPSDQFLQGSSSGFSNIFLNPQYLKAAQELLDELVNVRKQRGMGKQEKIRDIGLNNSKDTDGKSTSQSMQISSGPNDSNSNPSSQLSSAERQNWLDKKTKLLSILDEVDKRYRQYCHQMQIVVSSLDIVAGCGAAEPYTTLALRTISRHFRCLRDAISSQIQVIQRNLGEQEGIPRLRYVDQQLRQQKELQQLGVMRHAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLSRQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEINYNNSSENPLMQGKRDYYTEEIESQDNVQTITIDSVQACSTKEHVEKNVMDYESRKLHGGNKRFSLKNGFYSEITCDTATYDLSELGGGHQQQQQHVSLSLELRNCESDGLVISDDANHKRHNNNNNINNQILSSSSSQSTDMLDYHFTDSGKQQHRFGNTHLLHEFVV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0364 583 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
Psa5g0364 583 SMART HOX_1 339 403 IPR001356 GO:0003677
Psa5g0364 583 Gene3D - 336 413 - -
Psa5g0364 583 MobiDBLite consensus disorder prediction 184 229 - -
Psa5g0364 583 MobiDBLite consensus disorder prediction 197 229 - -
Psa5g0364 583 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Psa5g0364 583 SUPERFAMILY Homeodomain-like 340 405 IPR009057 -
Psa5g0364 583 CDD homeodomain 339 400 IPR001356 GO:0003677
Psa5g0364 583 Pfam Associated with HOX 159 297 IPR006563 -
Psa5g0364 583 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 532 - -
Psa5g0364 583 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 532 - -
Psa5g0364 583 SMART prehox3 151 298 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0364 Psa-Chr5 27307454 27311499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0364 63 423 Homeobox Transcription Factor Family AT1G19700 50.263 5.94e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa5g0364 POX 1.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0364 - - gmx:100807409 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0364 5 27307454 27311499 Psa5g0364 5 27307454 27311499 ECH