Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0349 ATGGCAACAACGGCTATATTTCTCACCATTGCAACATTCACCATACTCTTAACACATGCATCAACAGAGAACAACGTAACTCACTCCGAAATCCAAGCCTTAACAACCTTCAAACAAAACCTCCTCGACCCCCTCAACTCACTAACATCCTGGAACCCATCAACACCATCACCCCCATGCGACTGGCACGGCATTCTCTGTTCCAACAACAGAGTCCACCAAATCCACTTACCTCGTCTTCAACTCTCTGGTTCCATCTCTTCATCACTCTCCAACCTCACACAACTCCGCAAACTAAGTCTCCATTCCAACAACCTCATCTCCTCAATACCTTCCTCTCTTTCTCACTGTCTCTTCCTCCGCGCCATTTATCTTCACAACAACTCTCTCTCCGGTAACATCCCTCCTTCGCTTCTCAACCTCACCAACCTTCAGATTCTTAACTTTGCCGGTAACTTTCTCTCCGGCACCCTCCCAAACCATCTCTCTAACTCCCTACGCTTCCTCGACCTTTCCTCCAACTCATTCTCCAGTGACATTCCGGGGAACTTCTCCTCCAAGTCCCAGCTTCAACTCATCAACCTCTCACACAACGATTTCACCGGTCAAATACCTGTTACCGTTGGAGCTTTACAGCAGTTGGAATATCTGTGGCTAGACAACAACCATCTCCATGGAACATTACCTTCTGCTATATCCAACTGTTCCTCTATGGTGCACCTTAGCGTAGAGGATAACTCCATTGGCGGGTTGATCCCTTCTACGGTAGGAACTATGCCAAAGCTTCAAGTGCTGTCACTTTCCATGAATCAACTTTCTGGTTTTGTCCCCACAACCCTCTTTTGCAATGAAGACAACAACAACAACAGTAACAACAACAAAAACTATACTAATCTTAGAATTGTTCAGCTTGGGTTTAATATGCTCACGGGTATTTCAAATTGGCAAAATGGAAAATGCTTTAATAATTTTTTGGAGATTCTAGACCTTAAAGAGAATCACATTATTCACACTTTGTTTCCTTCTTGGTTGACCAATGTGAAATCTTTGAGGACTCTTGATCTCTCCGGAAACTCCTTTTCAGGCTATCTGCCTCGAGAAATTGGAGATCTTTCCTTGTTGGAAGAGCTAAGACTTTCTGATAATTTGTTGTCGGGTGTTGTTCCGAGTAGTATTGTGAAATGTAGGTTGTTGAAGGTTCTTGATCTTCGAAGGAATCGATTCTCAGGTCTTATTCCTTATTTTCTTGGAGAGATGAAGAGTTTGAAGGAGTTATCTCTTGGTGGTAACTTTTTTACTGGTTTAATTCCAAAGAGTTACGGAGCTCTTTTTGAGTTAGAGATTTTGGATTTAAGCAATAATAAACTGAATGGGGTTTTGCCTTTGGAGATTATGAAATTAGGAAACTTAGGTGTTTTGAATCTCAGCAGCAATAGATTCTCTGGTCAAGTTTCGTCTCGAGTTGGAGACTTAACAGCTTTGCAGGTTCTTAATTTGAGTCAATGTGGTTTTTCTGGTAGTGTTCCATCTACACTTGGGAGTTTGATGAAACTGAGGGTGTTGGATTTGAGCAAACAAAACCTTTCGGGTGAGTTGCCTGTTGAGGTTTTCGGATTACCGAGTTTGGAAATTGTGGCACTTGATGGAAACAGTTTGAGTGGTTCTGTTCCGGAGGGTTTCAGCAGCATTGTTAGTTTAAGGTATCTTAATCTTAGTTCCAATGCTTTTGTTGGCAACATTCCAACAAATTATGGTTTTCTAAGTTCCTTATCTGTTCTTTCTTTGTCTCACAATTTCATTTCTGGTTCGATACCTAATGAGATTGGTGGTTGTTCTCAACTTGAAGTGCTTCAGCTTCAATCAAATCGGTTAGTAGGTAACATTGTTGTTATCTCTCACTTTTCTCGTTTAAAGGAGCTGAATTTAGGAAACAATGGACTCGAAGGTGAAATCCCAGACGAGATTTCAAAGTGTTCTGCTTTGAACTCACTTGATTTGAGTGGTAATCACTTAACTGGTCACATACCGCAATCCTTGTCGAAATTATCAAATTTGAAGGCTTTGAATCTGTCTTCAAATCAATTGATAGGAGAAATTCCACTTGATCTTTCACGCATATCCGGTTTGAATTATTTAAATGTTTCCAACAACAACCTCGAGGGTGAGATTCCACAAATACTTAGTTCTAGATTCAATGACCCGTCTGTGTTTGCAATGAACAAGAGGCTATGTGGGGAACCATTGCATAGAGATTGTGCAAAATCGAGAAGACGAAAGAGAAAAAGACTAATAATCATCATAGGTGTTGCAGTTGCAGGACTATGCTTTCTGGCATTGTTTTGTTGTGGCTATGTTTACAGTCTCTTAAGGTGGCGAAAGAAGCTTCGAGAAGGAGTAACGGGCGAGAAGAAACGTAGCTCAACAAGTGCAGGCTCAAATGGAGAAAGAAACAGTCGAGGAAGCGGTGAAAACGGAGGACCAAAATTAATAGTCTTCAACAACAAAATCACATACGCCGAAACATTAGAAGCAACAAGAAACTTCGACGAAGAAAACGTTCTAAGCAGAGGAAAACACGGACTTGTTTTCAAAGCCTCATATCAAGATGGAATGGTTCTATCAATTCGTAGACTTCCAAACGGATCAACATTGATAGAAGAAAACACATTCCGCAAAGAAGCAGAATCGTTAGGCAAAGTTAAGCATCGAAACTTAACAGTTCTACGCGGATATTACGCAGGACCACCACCTGATGTAAGACTACTAGTTTATGATTACATGCCAAATGGAAATTTAGGTACATTGCTTCAAGAAGCTTCACAACAAGACGGTCATGTTTTGAATTGGCCAATGCGTCATTTAATCGCACTAGGCATTGCTCGCGGGTTGGGTTTTCTACACTCTGTCGAAATCGTTCATGGCGATGTTAAGCCACAAAATGTTCTTTTCGATGCTGATTTTGAAGCACATTTATCTGAATTCGGACTAGACCGGTTAACAATGGTTAGTAGTGTCCCAACCGAATTAGCAGAGCCGTCGTCTTCAACGACGATTCAAGTTGGTTCGTTGGGGTACGTCGCACCAGAAGCCGTGTTAACAGGGCAAGTGACAAAGGAAGGAGATATATATAGTTTCGGAATAGTGTTGTTGGAGATATTAACAGGAAGAAAAGCTGTTATGTTTACGGGTCAAGACGAAGATATAGTGAAATGGGTGAAGAAACAGTTACAAAAAGGTTTGATTTCGGAGCTGTTGGAACCTGGTTTGCTTGAGATTGATCAAGAATCATCAGAATGGGAAGAGTTTTTGTTAGGTGTTAAGGTTGCACTTCTTTGCACAGCACATGATCCTCTTGATCGACCTTCTATTAATGATATTGTTTTCATGCTTGAAGGTTGTCGTGTTGGACCTGATATACCTTCCTCTGCTGATCCAACCACACTACCTTCACCTGTTTCTTGA 3462 0.4128 MATTAIFLTIATFTILLTHASTENNVTHSEIQALTTFKQNLLDPLNSLTSWNPSTPSPPCDWHGILCSNNRVHQIHLPRLQLSGSISSSLSNLTQLRKLSLHSNNLISSIPSSLSHCLFLRAIYLHNNSLSGNIPPSLLNLTNLQILNFAGNFLSGTLPNHLSNSLRFLDLSSNSFSSDIPGNFSSKSQLQLINLSHNDFTGQIPVTVGALQQLEYLWLDNNHLHGTLPSAISNCSSMVHLSVEDNSIGGLIPSTVGTMPKLQVLSLSMNQLSGFVPTTLFCNEDNNNNSNNNKNYTNLRIVQLGFNMLTGISNWQNGKCFNNFLEILDLKENHIIHTLFPSWLTNVKSLRTLDLSGNSFSGYLPREIGDLSLLEELRLSDNLLSGVVPSSIVKCRLLKVLDLRRNRFSGLIPYFLGEMKSLKELSLGGNFFTGLIPKSYGALFELEILDLSNNKLNGVLPLEIMKLGNLGVLNLSSNRFSGQVSSRVGDLTALQVLNLSQCGFSGSVPSTLGSLMKLRVLDLSKQNLSGELPVEVFGLPSLEIVALDGNSLSGSVPEGFSSIVSLRYLNLSSNAFVGNIPTNYGFLSSLSVLSLSHNFISGSIPNEIGGCSQLEVLQLQSNRLVGNIVVISHFSRLKELNLGNNGLEGEIPDEISKCSALNSLDLSGNHLTGHIPQSLSKLSNLKALNLSSNQLIGEIPLDLSRISGLNYLNVSNNNLEGEIPQILSSRFNDPSVFAMNKRLCGEPLHRDCAKSRRRKRKRLIIIIGVAVAGLCFLALFCCGYVYSLLRWRKKLREGVTGEKKRSSTSAGSNGERNSRGSGENGGPKLIVFNNKITYAETLEATRNFDEENVLSRGKHGLVFKASYQDGMVLSIRRLPNGSTLIEENTFRKEAESLGKVKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLGFLHSVEIVHGDVKPQNVLFDADFEAHLSEFGLDRLTMVSSVPTELAEPSSSTTIQVGSLGYVAPEAVLTGQVTKEGDIYSFGIVLLEILTGRKAVMFTGQDEDIVKWVKKQLQKGLISELLEPGLLEIDQESSEWEEFLLGVKVALLCTAHDPLDRPSINDIVFMLEGCRVGPDIPSSADPTTLPSPVS* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0349 1153 Gene3D Ribonuclease Inhibitor 486 755 IPR032675 -
Psa5g0349 1153 Gene3D Ribonuclease Inhibitor 163 283 IPR032675 -
Psa5g0349 1153 SUPERFAMILY L domain-like 439 724 - -
Psa5g0349 1153 Gene3D Phosphorylase Kinase; domain 1 823 926 - -
Psa5g0349 1153 PANTHER LRR RECEPTOR-LIKE KINASE 3 1148 - -
Psa5g0349 1153 MobiDBLite consensus disorder prediction 804 820 - -
Psa5g0349 1153 ProSiteProfiles Leucine-rich repeat profile. 95 117 IPR001611 GO:0005515
Psa5g0349 1153 Gene3D Transferase(Phosphotransferase) domain 1 927 1137 - -
Psa5g0349 1153 MobiDBLite consensus disorder prediction 800 824 - -
Psa5g0349 1153 Pfam Protein kinase domain 850 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0349 1153 PRINTS Leucine-rich repeat signature 446 459 - -
Psa5g0349 1153 PRINTS Leucine-rich repeat signature 682 695 - -
Psa5g0349 1153 SUPERFAMILY L domain-like 28 313 - -
Psa5g0349 1153 Gene3D Ribonuclease Inhibitor 284 485 IPR032675 -
Psa5g0349 1153 SMART LRR_typ_2 682 706 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 141 165 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 419 442 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 371 394 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 211 235 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 467 491 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 634 658 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 259 282 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 347 370 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 539 562 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 93 117 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 587 611 IPR003591 -
Psa5g0349 1153 SMART LRR_typ_2 443 466 IPR003591 -
Psa5g0349 1153 ProSiteProfiles Protein kinase domain profile. 848 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0349 1153 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1148 - -
Psa5g0349 1153 Pfam Leucine rich repeat 517 575 IPR001611 GO:0005515
Psa5g0349 1153 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Psa5g0349 1153 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Psa5g0349 1153 Pfam Leucine rich repeat 325 384 IPR001611 GO:0005515
Psa5g0349 1153 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Psa5g0349 1153 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Psa5g0349 1153 SUPERFAMILY Protein kinase-like (PK-like) 828 1141 IPR011009 -
Psa5g0349 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 971 983 IPR008271 GO:0004672|GO:0006468
Psa5g0349 1153 ProSiteProfiles Leucine-rich repeat profile. 445 466 IPR001611 GO:0005515
Psa5g0349 1153 SUPERFAMILY L domain-like 290 482 - -
Psa5g0349 1153 Pfam Leucine Rich Repeat 636 658 IPR001611 GO:0005515
Psa5g0349 1153 Pfam Leucine Rich Repeat 661 682 IPR001611 GO:0005515
Psa5g0349 1153 SMART serkin_6 848 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0349 Psa-Chr5 25149699 25153683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0349 1 1152 Receptor kinase-like Gene Family AT4G36180 60.379 0.0 1275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Psa5g0349 Pkinase 1.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0349 - - gmx:100801571 1531.92