Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0330 ATGGCTCGTGGAAAGATCCAGATCAAGAGAATAGAGAACACCACAAACCGACAGGTTACTTATTCCAAACGAAGGAATGGTCTTTTCAAGAAGGCTAATGAACTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTTTCCAGCACCGGCAAGCTTCATGAGTATATCAGTCCTTCTGTCTCGACAAAGCAGTTTTTCGATCAGTATCAGATGACTGTTGGAATTGATCTATGGAACTCTCATTATGAGAATATGCAAGAGAATTTGAAGAAACTGAAAGATGTTAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTTTGAACGATCTGAGCATGGAAGAGCTGAGGTTACTTGAGGAAGAAATGGACAAGGCTGCTAAGGCTATTCGTGAGCGAAAGTATAAGGTGATAACAAATCAGATTGACACTCAAAGGAAGAAGTTTAATAATGAGAGGGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATGGACGTTTTGAAATGATGGAAAATGGAGCAGCAGATTATGAGTCTGTCATTGGTTTCTCAAATTTAGGTCCTCGGATGTTTGCCTTGACCTTACAGCCTACTCATCCGGCTAACAACCCTCATAATACTGGACAACAACAACCTGCTTCGGATCTCACCACTTACCCTTTACTTTTCTAG 702 0.4145 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSVSTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGDCLNDLSMEELRLLEEEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDGRFEMMENGAADYESVIGFSNLGPRMFALTLQPTHPANNPHNTGQQQPASDLTTYPLLF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0330 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g0330 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g0330 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa5g0330 233 Coils Coil 77 107 - -
Psa5g0330 233 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Psa5g0330 233 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa5g0330 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa5g0330 233 MobiDBLite consensus disorder prediction 206 227 - -
Psa5g0330 233 Coils Coil 151 171 - -
Psa5g0330 233 PANTHER APETALA3 1 229 - -
Psa5g0330 233 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Psa5g0330 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g0330 233 Coils Coil 114 138 - -
Psa5g0330 233 MobiDBLite consensus disorder prediction 205 227 - -
Psa5g0330 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa5g0330 233 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa5g0330 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Psa5g0330 233 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Psa5g0330 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0330 Psa-Chr5 23396684 23406477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0330 1 232 MADS-box Gene Family AT3G54340 54.936 1.77e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa5g0330 K-box 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0330 K09264 - gmx:547720 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0330 5 23396684 23406477 Psa5g0330 5 23396684 23406477 ECH