Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0313 ATGTCGACACCACGAGAAGATCAATTTCACCATTTCTCACAATTCAAATTCGACCTATTGCATTCCCCTAACCCTCCTCATCTTCCTCCTTTTACTCCTGTGCTTCCCTTGATTCAAAGAAACGGAATCAATAATGTAAACTTGCATGCTAGTAATGTTGAAGTGTTTCCTGGTCAGAGCAACACGGTTAATCTTCCTCCTCTTCTTCAAATCGAAACCAATCAAAGAGGAAAGCATAATGGTAAATCTAAAGTTTCAAGAAATGCAAAATCTGCGGCTCAGATGACAAATGGAGAATCACTGAATGCAGCGGCAGTAAACAACTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCAGCTTGATCCAAAATGCTAAGGATGGTACTCTTGATCTAAATAAAACTGCTGAGGTCTTAGAGGTTCAAAAAAGAAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGAATTGGGCCACGAGAACTAGAGGATCAAGTTAATACTCTTAAGGCTGAAGTTGAAAGTTTATATGCTGAGGAATACAATCTTGAGGAGTGTATAAGCGAAAGGAAGGAGCTTCTAAGAAACCTGGAAGAAGGTGAAAATACCGGAAAGTACCTTTTTTTTACCAAGGAAGATATTCTTACTCTTCCATGCTTCCAGAATAAGCAACTTATTGCAATCAAGGCTCCAAAAGCAAGTTTCATTGAGGTCCCCGATCCAGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTATTAGAAGTGCAACTGGACCGATAAATCTGTACCTCTTAAACAAGCACGACCACAAGTTAGAGGATGTGAGTGTCGAACAGGCAGAGTTAATGGACCCGTCGTGGAGTAGCAACCACAGCAGAACGGAGGAGGCTGTGGGATTATTAGAAAGCCAAGGTTATCAGAAAAACCCTTCTGGGAGTTTAAGTTTGCAAGGCTCGGAGGCTTTTGGAATTCAACAAATTACTCCTACAGATTTGGATGTTGCTGGTGACTATTGGTTTCAATCAGATCCTGATGTTGGCCTAACACAATTGTGGGGGTAG 1137 0.4055 MSTPREDQFHHFSQFKFDLLHSPNPPHLPPFTPVLPLIQRNGINNVNLHASNVEVFPGQSNTVNLPPLLQIETNQRGKHNGKSKVSRNAKSAAQMTNGESLNAAAVNNCRYDSSLGLLTKKFVSLIQNAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGIGPRELEDQVNTLKAEVESLYAEEYNLEECISERKELLRNLEEGENTGKYLFFTKEDILTLPCFQNKQLIAIKAPKASFIEVPDPDEELGFHQRQYRMIIRSATGPINLYLLNKHDHKLEDVSVEQAELMDPSWSSNHSRTEEAVGLLESQGYQKNPSGSLSLQGSEAFGIQQITPTDLDVAGDYWFQSDPDVGLTQLWG* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0313 378 Pfam E2F transcription factor CC-MB domain 191 290 IPR032198 GO:0046983
Psa5g0313 378 SUPERFAMILY E2F-DP heterodimerization region 186 292 IPR037241 -
Psa5g0313 378 Gene3D - 105 177 IPR036388 -
Psa5g0313 378 Pfam E2F/DP family winged-helix DNA-binding domain 112 175 IPR003316 GO:0005667|GO:0006355
Psa5g0313 378 Gene3D - 182 293 - -
Psa5g0313 378 PANTHER TRANSCRIPTION FACTOR E2FC 35 378 - -
Psa5g0313 378 Coils Coil 205 225 - -
Psa5g0313 378 SUPERFAMILY "Winged helix" DNA-binding domain 110 173 IPR036390 -
Psa5g0313 378 SMART E2F_TDP_2 110 175 IPR003316 GO:0005667|GO:0006355
Psa5g0313 378 CDD E2F_DD 186 293 IPR032198 GO:0046983
Psa5g0313 378 PANTHER TRANSCRIPTION FACTOR E2F 35 378 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0313 Psa-Chr5 22502183 22512778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0313 90 377 E2F-DP Transcription Factor Family AT1G47870 53.401 2.69e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Psa5g0313 E2F_CC-MB 9.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0313 K06620 - gmx:100797301 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0313 5 22502183 22512778 Psa5g0313 5 22502183 22512778 ECH