Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0299 ATGAACAATAGAGCGAGATATCCACTTGGGAATGGGTTAGGTCGAGGTGGTGGTGGCGGTGGCGGAGGGTTTCAACAGAGACCAAATCAACAACAGTATGTGCAGAGGCACATGATGCAAAATCAGCATCCACAACAACAATACCAGCAGCATCAACAGAATCAACAATATCAGCAGCAGCAACAACAACAGTGGCTGAGAAGGAACCAGTTGAGTGGAACTGACACCAGTGTTGTGGAGGAGGTCGAGAAGACTGTGCAGTCTGAAACAAACGACTCTAGTCGTCAAATCCTTATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGATATCTTCGTAAGCCGTATATCATTAATCTTATGGACGAGCTAACTCTGAAGGGTATTACCCAATTTTATGCATTTGTGGAGGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCAGTTAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATTCATGCTAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCACGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAGACATATCTGCACAGGGTTGGCCGATCAGGGAGGTTTGGACACCTTGGTTTAGCAGTGAACTTAATAACCTATGAGGATCGTTTCAATTTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCCCCATTCATTGATCAGGCCATATATTGTCGGTGA 888 0.4155 MNNRARYPLGNGLGRGGGGGGGGFQQRPNQQQYVQRHMMQNQHPQQQYQQHQQNQQYQQQQQQQWLRRNQLSGTDTSVVEEVEKTVQSETNDSSRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0299 295 Pfam Helicase conserved C-terminal domain 147 253 IPR001650 -
Psa5g0299 295 SMART helicmild6 172 253 IPR001650 -
Psa5g0299 295 CDD SF2_C_DEAD 133 262 - -
Psa5g0299 295 Gene3D - 126 294 IPR027417 -
Psa5g0299 295 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 93 295 - -
Psa5g0299 295 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 17 89 - -
Psa5g0299 295 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 93 295 - -
Psa5g0299 295 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 17 89 - -
Psa5g0299 295 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 132 292 IPR001650 -
Psa5g0299 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 290 IPR027417 -
Psa5g0299 295 MobiDBLite consensus disorder prediction 36 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0299 Psa-Chr5 21697812 21700253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0299 96 285 Eukaryotic Initiation Factors Gene Family AT3G19760 40.104 9.45e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0299 K12614 - han:110937653 411.379