Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0272 ATGATAACAGAAAACTCCGGCAAGCACTATCCTCCTCCACTCGCCTCTCACAACGACGTCGTTAATGACGCTACTCTCTTTTGGGACACTCTTCGTCGCTTTCACTTTCTCATGGCAACCAAATTCATGATTCCGGTGATTGGAGGTAAGGAACTGGATTTGCACGTTCTCTACGTGGAGGTTACAACCAGAAGCGGTTATGAAAAAGTTGTTGAGGAAAAAAAATGGAGAGAAGTTGGTACTGTGTTTAGATTCTCATCTACTACTACAAGTGCTTCTTTTGTGTTAAGAAAACACTATTTGAATCTTCTTTACCATTACGAACAAGTTCATTTCTTCAAACTTCAAGGTCCTATTTATACTCCATCATCAGATGCGTTTTCTGGAAACAGTCCTTCGTGGAAACCTGAATTAGCTATCGTTCAATATTCACCAAAGATGGTAAACAATAGTTCTGAATCTCAAGATGAAGTGGACGTAGAAAGTTCATGTGTTTTGGGAAAAGGAACAATAGAAGGGAAATTTGATTGTGGTTACATAGTATCAGTAAAATTGGGTTCTGAGGTTCTGAGAGGTGTGCTTTACCATCCAGAAAAAGTGGTTGCTTCTTCTCCTTCACAACATGGGAGTGCCACTGCCATTTTACCATTCAATCACAAATCTTATGGCTCTGGTAGGAGGAGGAGAAGAAGAAAAAGAAAGTGGGACCCTAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAGAGCATTACAAACTCAAACAACTTTATCCAAACAGAGAAAGGGAGTTTACTAAAATGATTGGTCAGTCATGGAATTGTCTCAGTCCCGAAGAAAGAGTGATTTACCAAAACATTGGCTTAAGGGATAAAGAAAGATACAAAAGAGAATTGACAGAGTATAAAGAGAAAATGAAGGATGGGCAGACAGAAGAACTTGGAAATTCAAAATAA 969 0.3901 MITENSGKHYPPPLASHNDVVNDATLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTTRSGYEKVVEEKKWREVGTVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKLQGPIYTPSSDAFSGNSPSWKPELAIVQYSPKMVNNSSESQDEVDVESSCVLGKGTIEGKFDCGYIVSVKLGSEVLRGVLYHPEKVVASSPSQHGSATAILPFNHKSYGSGRRRRRRKRKWDPNYPKPNRSGYNFFFAEEHYKLKQLYPNREREFTKMIGQSWNCLSPEERVIYQNIGLRDKERYKRELTEYKEKMKDGQTEELGNSK* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0272 322 CDD ARID_HMGB9-like 23 108 IPR045303 GO:0003677
Psa5g0272 322 Pfam ARID/BRIGHT DNA binding domain 26 108 IPR001606 GO:0003677
Psa5g0272 322 Gene3D High mobility group box domain 223 322 IPR036910 -
Psa5g0272 322 SMART ARID_2 18 108 - -
Psa5g0272 322 SUPERFAMILY ARID-like 17 120 IPR036431 GO:0003677
Psa5g0272 322 Pfam HMG (high mobility group) box 240 307 IPR009071 -
Psa5g0272 322 Gene3D - 14 118 IPR036431 GO:0003677
Psa5g0272 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 317 - -
Psa5g0272 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 240 307 IPR009071 -
Psa5g0272 322 SMART bright_3 22 113 IPR001606 GO:0003677
Psa5g0272 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 317 - -
Psa5g0272 322 ProSiteProfiles ARID domain profile. 21 112 IPR001606 GO:0003677
Psa5g0272 322 SUPERFAMILY HMG-box 237 312 IPR036910 -
Psa5g0272 322 SMART hmgende2 239 308 IPR009071 -
Psa5g0272 322 Coils Coil 296 316 - -
Psa5g0272 322 CDD HMGB-UBF_HMG-box 240 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0272 Psa-Chr5 20061418 20063920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0272 8 314 ARID Transcription Factor Family AT1G76110 61.783 8.39e-129 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa5g0272 ARID 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0272 - - gmx:100784746 482.256