Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0259 ATGACTAATAAATCTGACTCCGTCGTTTACCTTCACGGTAATCTTGCTTTGAAAATCGTTGAGGCTCGTTTTCTACCGAACATGGACATGTTCTCAGAGCGTTTTAGGAGATTCTTCTCCGCTTTCAATTCATGCAGAACTTCAATTTCCGGTAAAGGAAAGAATCACGAGCCACGTCATCATCATCATAAGATTATCACCAGTGATCCTTACGTAACGGTTTGTCTCGCCGGTGCTACGGTGGCGCGAACGAGAGTTATTTCGAACTCGCAGTCGCCGAAATGGGAAGAGCATTTCAGGATTCCTCTGGCTCATCCTGCTTCTCAGGTTGAATTTTATGTGAAGGATAACGATATGTTCGGCGCTGATTTGATCGGAATCGCAACGGTTTCCGCGACGAGGATTTTATCAGGCGATAATATATGTGATTGGTTTCCGATTATAGGTTCTTTCGGGAAGCCGCCGAAGCCTGATTGCGCGGTTTTTCTTGAGATGAAATTCACGAGGTGTGATGATGATCCTCTGTATCGGTCCGGTGTTTCGCTTGGGCCTGATAGGTTTGCGGTTGAGGATTCGTATTTTCCGGTGAGGCGTGGAGGATTGGTGACGCTGTATCAAGATGCGCATGTTCCGGATTCAATGTTGCCGGGGATTGAATTGGATGATGGTGTAGAGTTTCAGCAGGGGAAGTGCTGGGAAGATATCTGTCATGCAATCTTGGAAGCGCATCATATGGTGTATATTGTCGGTTGGTCAATTTTTCACAAGGTGAAGCTTGTTAGAGAACCAACCAAACCCTTGCCAAATGGTGGAAATTTGAATTTGGGGGAATTGCTCAAGTACAAATCACAAGAAGGTTTGCGAGTTTTACTGTTGGTTTGGGATGATAAAACTTCACACAGTAAATTTTTCATAAACACGAATGGAATAATGCAAACTCATGACGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTACATGTGTATTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGTTGTCGGAACGCTTTTTACGCACCATCAGAAATGTGTGATCGTTGATACTCAAGCACATGGAAATAACCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGTCGGTATGATACACCTGAGCATAGAATTTGCCGTGATCTTGACACTGTTTATAAGGATGATTATCATAATCCCACATTTTCTGCAGGAACCAAGGGTCCAAGGCAACCATGGCATGATCTGCATTGTAAAATTGAAGGGCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAAGAGAGCCACCAAATGGTCTGAGTTAGGTCAAAAATTAAAAAGAGTATCACAGTGGCATGATGATTCTTTAATTAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAGTGCCAAATGACGATCCTGAATTATGGGTTTCAAAGGAAGATGACCCTGAAAATTGGCATGTTCAGGTTTTTCGATCAATAGATTCAGGCTCTTTGAAAGGGTTTCCTAAGGATATACATGAAGCCAGGGCTCAGAATCTTGTTTGTGCTAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCCTACATACATGCCATTAGATCTGCCCAGCATTTTATTTATATCGAGAATCAATACTTTATTGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTGCTGATAACTTAATTCCTATGGAGTTGGCGCTGAAAATTGTCAGTAAGATCAGATCTCGGGAGAGATTTACTGTTTATATTGTCATTCCAATGTGGCCAGAAGGTGTCCCTTCTTCTGTCACTGTGCAAGAGATTCTCTATTTTCAGAGACAAACTATGCAAATGATGTATGGAATCATAGCCAGGGAATTAAAATATACAAACCTTAACAATAGCCATCCACAAGATTACCTCAATTTTTACTGTCTTGGTAACCGAGAAAAGTTTGCAACTGGAGATTTAAATCCAAAGAATTCACATTCCGATGATGGTGACACGGTTTCAGCTTCACAAAAGTTCCAACGGTTTATGATTTATGTACATGCCAAAGGAATGGTTGTGGATGATGAGTATGTGATGGTTGGATCTGCCAATATCAACCAACGATCTTTGGGTGGATCAAGAGATACCGAGATAGCAATGGGTGCATATCAACCCCGTCATACATGGAACAGGAAAAAGGGCCACCCTCGCGGGCAGGTATATGGGTATAGAATGTCCTTGTGGGCAGAGCACTTAGGGACCATACATGACTGCTTCAAAGAACCTGAAAGTTTGGAATGTGTGGAGACTGTGAACAAGATCGCGGAACAAAACTGGAAGAACTTTACAGCTGATGATTATAAGCCATTGCAAGGGCACATTATGAAGTATCCCATCAAAGTGAATGCAGATGGGAGAGTAGGCCCCTTGCCTGGATTTGAGTCTTTCCCAGATGTCGGCGGCAAGGTGCTTGGTTCCCGATCTAATCTTCCTGATGCTCTAACTACATAG 2547 0.4236 MTNKSDSVVYLHGNLALKIVEARFLPNMDMFSERFRRFFSAFNSCRTSISGKGKNHEPRHHHHKIITSDPYVTVCLAGATVARTRVISNSQSPKWEEHFRIPLAHPASQVEFYVKDNDMFGADLIGIATVSATRILSGDNICDWFPIIGSFGKPPKPDCAVFLEMKFTRCDDDPLYRSGVSLGPDRFAVEDSYFPVRRGGLVTLYQDAHVPDSMLPGIELDDGVEFQQGKCWEDICHAILEAHHMVYIVGWSIFHKVKLVREPTKPLPNGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTNGIMQTHDEETRKFFKHSSVTCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRICRDLDTVYKDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWKRATKWSELGQKLKRVSQWHDDSLIKLERISWILSPSESVPNDDPELWVSKEDDPENWHVQVFRSIDSGSLKGFPKDIHEARAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIVSKIRSRERFTVYIVIPMWPEGVPSSVTVQEILYFQRQTMQMMYGIIARELKYTNLNNSHPQDYLNFYCLGNREKFATGDLNPKNSHSDDGDTVSASQKFQRFMIYVHAKGMVVDDEYVMVGSANINQRSLGGSRDTEIAMGAYQPRHTWNRKKGHPRGQVYGYRMSLWAEHLGTIHDCFKEPESLECVETVNKIAEQNWKNFTADDYKPLQGHIMKYPIKVNADGRVGPLPGFESFPDVGGKVLGSRSNLPDALTT* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0259 848 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 694 721 IPR001736 GO:0003824
Psa5g0259 848 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 168 IPR035892 -
Psa5g0259 848 Pfam C2 domain 13 147 IPR000008 -
Psa5g0259 848 SMART pld_4 694 721 IPR001736 GO:0003824
Psa5g0259 848 SMART pld_4 350 385 IPR001736 GO:0003824
Psa5g0259 848 PIRSF PLD_plant 1 848 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Psa5g0259 848 Pfam PLD-like domain 547 730 IPR025202 -
Psa5g0259 848 SMART C2_3c 14 144 IPR000008 -
Psa5g0259 848 Gene3D Endonuclease Chain A 515 743 - -
Psa5g0259 848 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Psa5g0259 848 SUPERFAMILY Phospholipase D/nuclease 530 780 - -
Psa5g0259 848 Gene3D Endonuclease Chain A 224 470 - -
Psa5g0259 848 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Psa5g0259 848 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Psa5g0259 848 Pfam Phospholipase D C terminal 769 838 IPR024632 -
Psa5g0259 848 CDD C2_plant_PLD 7 168 - -
Psa5g0259 848 Gene3D C2 domain 8 167 IPR035892 -
Psa5g0259 848 PANTHER PHOSPHOLIPASE D 6 847 - -
Psa5g0259 848 SUPERFAMILY Phospholipase D/nuclease 195 455 - -
Psa5g0259 848 PANTHER PHOSPHOLIPASE D 6 847 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0259 Psa-Chr5 19338586 19345356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0259 5 667 Phospholipase D Gene Family (Wang group) AT4G35790 66.814 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0259 K01115 - gmx:100795859 1456.43