Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0246 ATGAATTTGTTTATGTTTCTTTGTCATCACTTGGTGGTGTTGGTGTTGATGCTACCCTATTTGGGTGGAGTTTATTCAAATTCAACAGTTTCAATACCCTCCATTGTGAACATTGGAGCTATCTTCACCTTTGATTCCTCCATTGGTAAAGTTTCTAAACTTGCCATGGAACAAGCTGTCCAAGATGTCAACTCCAATTCCTCCATTCTACACTCTACTCAACTTGTTCTTCATATGAAATCTTCCAATTGCAGTGGTTTTGATGGCATGATTCAAGCTCTGCGGTTCATGGAGACGGATGCAGTTGCTATATTAGGTCCACAATCTTCTGTAGTTTCTCACATAGTATCCCATGTTGCAAACGAGCTTCGTGTTCCTATGTTGTCGTTTGCAGCTACAGACCCTACGCTCTCGTCGCTTCAATTCCCTTTCTTTGTCAGGACAACGCTCAGTGATTCGTATCAGATGACTGCTGTTGCTGAAATCATTGATTATTATGGATGGAAAGAAGTCATTGCTATTTATGTTGATGATGATTATGGAAGAAACGGGGTGTCTGCGTTAGAAGATGCCTTGGCAGCGAGGCGTTGTAGAATTTCCTACAAGGTGGGAATCAAATCTGGAGCTGATGTTGATAGAAATGAAATTACCAATGTGCTTGTGAATATGGCTCTAATGCAGTCTCGAGTTATAGTTGTCCATGCCCATTCGAATTCTGGATTTATGATCTTTAAAGTGGCGCATTATCTTGGAATGATGCAGGAGGGTTATGTATGGATAGCCACAGATTGGCTTTCCACTGTTCTTGATTCTGTTTCGCTTCCTTTGGAGAAAATGGATACTCTGCAGGGTGCACTTGTTTTGCGCCAGCATACGCCTGATACTGATAGGAAGAAAGCGTTTTTCTCGAGGTGGAATAAGTTAACTCATGGTTCCTTAGGGTTACATTCTTATGGCCTCCATGCTTACGATTCTGTTTGGCTCGTTGCACAAGCTATTGATAAATTTTTCAGTCAGGGTGGGGTCATTTCGTGGACCAATTACACAAGTTTGCATGACGGTAAGGGAAAGGGCGGCGGTCTTAATCTTGATGCGATGAGCATATTTGACAATGGAACACTTCTGTTGGAAAACATACTGCGGAGTGATTTTGTTGGATTATCAGGTCCAATGAAATTTGATTCAGATAAATCTCTTGTTCGTCCGGCCTATGACATTGTTAATGTTGTTGGAAATGGTGTTCGTCGAATTGGATACTGGTCTAACTATTCTGGTCTGTCGATTGTATCTCCCGAGACATTGTATGCTAGTCCACCTAATAGATCAAGTGCAAACCAGCATCTTCACTCAGTGATATGGCCCGGAGAAACATTAAGCAAGCCCCGTGGGTGGGTTTTCCCCAGCAATGGGAAACAATTGAGAATTGGTGTGCCTATCCGAGCCAGTTATCGTGAATTCGTGTCGCCGGTGAAGGGAACTGACATGTTTAAAGGGTTCTGCATTGATGTATTTGTAGCTGCTGTGAACTTGTTACCGTACGCCGTTCCTTACCGGTTTGTGCCATTCGGAGATGGCCTAAAAAATCCAAGCTACACCGAATTCGTCAACTTAATAACCACTGGTTATTTTGACGGTGCTATTGGCGACATTGCTATTGTCACAAACCGAACAAGGATTCTAGATTTTACACAGCCATATGCTGCATCCGGACTTGTTGTGGTTGCCCCTTTCAAGAAGATCAATTCCGGCGGTTGGGCTTTTCTGCAGCCGTTCACTCCTCTTATGTGGATAGTGACTGCGTGTTCCTTCTTTTTTGTCGGAATAGTTGTATGGATTCTCGAACACAGGATCAACGATGAGTTCAGGGGTTCACCTAAACAACAACTCATAACCATACTATGGTTTAGCCTGTCAACGCTCTTTTTTTCCCACCGAGAGAACACAATGAGTACTCTCGGCCGCGGCGTGATACTCATATGGTTGTTTGTGGTTTTGATCATTAATTCCAGCTACACTGCTAGTTTAACGTCCATACTCACGGTGCAGCAGTTATCTTCACCTATCAGCGGCTTAGATAGCTTAAAAGCTAGTGATGAACCTATAGGTTTCCAAGTTGGTTCATATGCGGAACGTTACTTGACAGAAGATATTGGAATATCCAAATCTAGACTTGTTGCTCTTGGATCGCCGGAGGCATATGCTAAGGCGCTCCAGCTCGGTCCTAGTAAAGGAGGTGTTGCTGCTATTATAGACGAACGACCATACGTCGAAATATTCTTATCGACCCAATGCACGTTCAGGATTGTTGGTCAGGAGTTCACCAGGAGTGGCTGGGGTTTTGCATTCCCTCGGGACTCCCCTTTGGCGGTGGATTTGTCAACTGCGATTCTACAACTTTCTGAAACTGGTGATCTGCAGCGGATTCATGATAAGTGGATTACGCGAAGTACTTGTAGTTTAGACAATACTGAAATTGATTCGGATCGTCTTCAGCTCAAAAGCTTCTGGGGTCCGTCGAGGAGTGAAAGACGAAAGAGGAACGGAGATGAAATGTCGCCTGAGGATCAATTGGGAAGGCAACCGAAGAGGATACAAAGAGTAACAGCAGCATAG 2613 0.4378 MNLFMFLCHHLVVLVLMLPYLGGVYSNSTVSIPSIVNIGAIFTFDSSIGKVSKLAMEQAVQDVNSNSSILHSTQLVLHMKSSNCSGFDGMIQALRFMETDAVAILGPQSSVVSHIVSHVANELRVPMLSFAATDPTLSSLQFPFFVRTTLSDSYQMTAVAEIIDYYGWKEVIAIYVDDDYGRNGVSALEDALAARRCRISYKVGIKSGADVDRNEITNVLVNMALMQSRVIVVHAHSNSGFMIFKVAHYLGMMQEGYVWIATDWLSTVLDSVSLPLEKMDTLQGALVLRQHTPDTDRKKAFFSRWNKLTHGSLGLHSYGLHAYDSVWLVAQAIDKFFSQGGVISWTNYTSLHDGKGKGGGLNLDAMSIFDNGTLLLENILRSDFVGLSGPMKFDSDKSLVRPAYDIVNVVGNGVRRIGYWSNYSGLSIVSPETLYASPPNRSSANQHLHSVIWPGETLSKPRGWVFPSNGKQLRIGVPIRASYREFVSPVKGTDMFKGFCIDVFVAAVNLLPYAVPYRFVPFGDGLKNPSYTEFVNLITTGYFDGAIGDIAIVTNRTRILDFTQPYAASGLVVVAPFKKINSGGWAFLQPFTPLMWIVTACSFFFVGIVVWILEHRINDEFRGSPKQQLITILWFSLSTLFFSHRENTMSTLGRGVILIWLFVVLIINSSYTASLTSILTVQQLSSPISGLDSLKASDEPIGFQVGSYAERYLTEDIGISKSRLVALGSPEAYAKALQLGPSKGGVAAIIDERPYVEIFLSTQCTFRIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWITRSTCSLDNTEIDSDRLQLKSFWGPSRSERRKRNGDEMSPEDQLGRQPKRIQRVTAA* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0246 870 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 49 65 - -
Psa5g0246 870 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 109 137 - -
Psa5g0246 870 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Psa5g0246 870 CDD GluR_Plant 471 813 - -
Psa5g0246 870 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 837 - -
Psa5g0246 870 PRINTS Metabotropic glutamate GPCR signature 104 130 IPR000337 GO:0004930|GO:0007186|GO:0016021
Psa5g0246 870 PRINTS Metabotropic glutamate GPCR signature 136 155 IPR000337 GO:0004930|GO:0007186|GO:0016021
Psa5g0246 870 PRINTS Metabotropic glutamate GPCR signature 155 171 IPR000337 GO:0004930|GO:0007186|GO:0016021
Psa5g0246 870 PRINTS Metabotropic glutamate GPCR signature 171 188 IPR000337 GO:0004930|GO:0007186|GO:0016021
Psa5g0246 870 MobiDBLite consensus disorder prediction 838 861 - -
Psa5g0246 870 Gene3D - 779 812 - -
Psa5g0246 870 Pfam Receptor family ligand binding region 53 411 IPR001828 -
Psa5g0246 870 Gene3D - 470 581 - -
Psa5g0246 870 SUPERFAMILY Periplasmic binding protein-like II 449 815 - -
Psa5g0246 870 CDD PBP1_GABAb_receptor_plant 37 429 IPR044440 -
Psa5g0246 870 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Psa5g0246 870 Gene3D - 745 778 - -
Psa5g0246 870 PIRSF IGluLR_plant 3 838 IPR017103 -
Psa5g0246 870 Gene3D - 151 426 - -
Psa5g0246 870 Gene3D - 54 401 - -
Psa5g0246 870 SUPERFAMILY Periplasmic binding protein-like I 32 465 IPR028082 -
Psa5g0246 870 Pfam Bacterial extracellular solute-binding proteins, family 3 495 813 IPR001638 -
Psa5g0246 870 PANTHER GLUTAMATE RECEPTOR 3.3 24 837 - -
Psa5g0246 870 MobiDBLite consensus disorder prediction 837 870 - -
Psa5g0246 870 Pfam Ligand-gated ion channel 814 837 IPR001320 GO:0015276|GO:0016020
Psa5g0246 870 Gene3D - 582 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0246 Psa-Chr5 17848841 17852275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0246 23 837 Ion Channels AT1G42540 66.095 0.0 1169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0246 K05387 - gmx:100777478 1342.02