Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0231 ATGGGAAACTGTTTGGCAAATTCAGATCATGACAGTAAGATTCAGAAAAAGAAGAAGCAACAAAACAATACTTCTTCTGCAGATGGTGAGAAAAGTGTTGGCGTTGGAGCGATGAATAAGGAAAGATATGGCGGAAAAATTGTGAAGCCGAATCTGAGAATGTTCACATTAGATGAGTTGAAAAGTGTGACAAGAAACTTCAGACCAGACACAGTACTAGGCGAAGGTGGTTTTGGACAAGTTTTCAAAGGATGGATCGACAAAAACACTTACAAACCATCTAAAGTTGGTGTTGGAATTCCCGTCGCGGTTAAGAAATCCAGCGCGGATAGTCTCCAAGGTTTACAAGAATGGCAGAGTGAAGTGAAATTTTTAGGGAAATTCTCTCATCCAAATCTGGTTAAACTACTTGGTTTTTGCTGGGAGGAAGATCAGTTTTTGCTTGTGTATGAATACATGCAAAAGGGAAGTTTGGAGAGTCACATATTCAAAAGTCCAGAACCACTTTCTTGGGAAATAAGGATGAAGATAGCTATAGGAGCTGCTAGGGGGTTGGATTTTTTGCATACTTCAGAGAAGTCTGTTATTTATAGAGATTTCAAATCCTCTAACATTTTGCTTGATGGGGATTTTAATGCAAAGTTGTCTGACTTTGGGTTGGCAAAGCTTGGGCCAGTCAATGGTAGGTCACATGTAACCACAAGAATCATGGGCACATATGGTTATGCAGCCCCTGAGTACATGGCTACAGGTCATCTTTATGTGAAAAGCGATGTGTATGGATTTGGTGTTGTTCTTCTAGAAATGCTAACAGGTTTGATAGCACTTGACAGAAATAGGCCAACAAATGAGATGAATTTGGTGGATTTCACAAAGGGATCTCTACATGACAAAAAGAAACTCAAAAAGATAATGGATCAAAGATTGGATCAACAATATCCATTAGCAGCAGCATTTCTTATAGCTCAACTTATTCTTCAATGTTTAGAAGCTGACCCAAAAAACAGGCCTTCTATGGAGCAAGTACTAGAAATTTTAGAAAAGGCACAAACTATTAAATACAAGCCCAAAGTGAAAAAATCGAGAAGTGCGCAACAACAACAAAATAAGAGACCAAAAGAACATTCTATCACTGATCAATAA 1143 0.3841 MGNCLANSDHDSKIQKKKKQQNNTSSADGEKSVGVGAMNKERYGGKIVKPNLRMFTLDELKSVTRNFRPDTVLGEGGFGQVFKGWIDKNTYKPSKVGVGIPVAVKKSSADSLQGLQEWQSEVKFLGKFSHPNLVKLLGFCWEEDQFLLVYEYMQKGSLESHIFKSPEPLSWEIRMKIAIGAARGLDFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDRNRPTNEMNLVDFTKGSLHDKKKLKKIMDQRLDQQYPLAAAFLIAQLILQCLEADPKNRPSMEQVLEILEKAQTIKYKPKVKKSRSAQQQQNKRPKEHSITDQ* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0231 380 ProSitePatterns Protein kinases ATP-binding region signature. 73 106 IPR017441 GO:0005524
Psa5g0231 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Psa5g0231 380 ProSiteProfiles Protein kinase domain profile. 67 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0231 380 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 15 371 - -
Psa5g0231 380 Gene3D Phosphorylase Kinase; domain 1 51 152 - -
Psa5g0231 380 MobiDBLite consensus disorder prediction 1 35 - -
Psa5g0231 380 SUPERFAMILY Protein kinase-like (PK-like) 52 359 IPR011009 -
Psa5g0231 380 MobiDBLite consensus disorder prediction 355 380 - -
Psa5g0231 380 PANTHER OS01G0588500 PROTEIN-RELATED 15 371 - -
Psa5g0231 380 CDD STKc_IRAK 73 348 - -
Psa5g0231 380 Pfam Protein tyrosine and serine/threonine kinase 71 346 IPR001245 GO:0004672|GO:0006468
Psa5g0231 380 Gene3D Transferase(Phosphotransferase) domain 1 153 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0231 Psa-Chr5 16629896 16632855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0231 20 346 Glycoside Hydrolase AT3G07070 44.444 4.10e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa5g0231 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0231 - - aprc:113865973 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0231 5 16629896 16632855 Psa5g0231 5 16629896 16632855 ECH