Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0227 ATGATGTCTGGAAGCTGGGACGGAAATAATGATCCTGGTAGCCAGTCGGATGATAGCTTACTTTTCGAGAGGTTGCACATTGAGCCTATTTATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAACGGACAGACTTTTGAGCGTGAAGCAATCGAAAAATGGTTCAAGGAATGCAGGGAGAGTGGACGGAAACTGGTTTGCCCTTTGACTCTTCGAGAATTAAAAAGTGCAGAATTGAATCCTAGTTTGGCTTTGCGGAACACCATTGAAGAGTGGACTGCGAGGAATGAAGCTGCACAGCTGGATATGGCTCGTCGTTCATTGAATACAGGGGGTCCAGAAAAGGAAGCCCTTATGGCCTTGAGATATGTCCAGCACATCTGTCGAAGAAGTCGGTCGAATAAACATATCGTCCGCAGTGCAGGGCTTATACCAATGATTGTTGATATGCTGAAGAGTAGCAGCCGTAAAGTTCGTTGTAGAGCTCTTGAAACACTTAGAATCGTGGTCGAGGGAGATGACGAGAATAAGGAACTGCTGGCTGAAGGGGACACTGTACGCACGGTGGTAAAGTTCCTTTCTCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCCTGCTCTATGAACTTTCAACCTCTGAAACCCTTTGTGAGAAGATTGGTTCAGTCAATGGATCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGACGTTTCCACTGTCGAGAAGGCTGATAAAACATTGGAGAATCTGGAAAAATATGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTGACCCATCTTCTTGAAGGTCCACCAGAAACCAAGCTGTCCATGGCTGGAATCCTTGGTGAGCTGGTTTTGGATAATGATGTTAAAGTCTTTGTTGCTAGAACTGTGGGCTCATCTCTGATTGATATCATGAAAAGTGGCAATATGCAGTCAAGAGAAGCTGCACTGAAGGCGCTAAATCAGATATCATCATGTGAGCCAAGCGCAAAGGTTTTAATAGAAGCTGGAATACTTTCCCCTCTTGTCAACGATCTTTTTGCAGTGGGCCCTCATCTGCTTCCCACGCGACTAAAAGAGGTCTCTGCTACAATTCTTGCCAGTGTTGTGAATTCAGGAGAAGACTTTGACATGATTCCACTTGGACCCGATGACCAAACTCTGGTCTCAGAGGATATAGTTCATAAGCTACTCCATCTTATTAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTGCTAGTTCTCCAACTACAGTGCTGAGTCTTGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTTTAGTTCAGTTCATCGAGGCACCACAGAAAGATCTCCGTTTAGCTTCTATAAAACTTCTTCAGAATTTGTCTCCACACATGGGCCCTGAATTAGCCGATGCGCTTCGGGGATCTGTAGGACAGCTTAGTAGTCTAGTTAAAGTCATATCAGAGAATATCGGAATCACTGAAGAGCAAGCAGCTGCTGTTGGCCTCTTAGCTGATCTACCCGAGAGAGATTTAGGCCTCACGAGACAGCTACTGGATGAAGGTGCCTTTCTAATGGCTATATCAAAGGTGATTGCCATCCGGCAGGGAGAAATCAGAGGCACACGGTTCGTGACACCATTTCTCGAAGGGCTTATGAAGATTGTTGCTAGGGTTACATATGTCTTGGCTGATGAGCCTGATGCCGTCGCACTTTGCCGCGATCAAAATCTTGCGGCGCTCTTCATAGAACTGCTTCAAACCAATGGACTTGATACTGTGCAGATGGTTTCTGCTATAGCTTTGGAGAATTTATCGCTGGAATCAAAGAATTTAACCAAATTGCCCGAGATGCCAGAACCAGCTTTTTGTGCTTCATTCTTTTCATGTTTCAGTAAACCACCAGTCATTACCGGATTATGCAGGATCCACCGTGGGAAGTGTTCGTTAAAAGAAACGTTTTGTCTTTACGAAGGACAGGCCGTCCTTAAGTTAGTAGCTCTGCTGGACCACACAAATGTGAACGTGGTTGAGGCAGCACTTGCAGCCTTATGTACTGTAATAGATGATGGAGTTGATATTGAGCAAGGTGTACTGGTTTTGTGTGAAGCAGAGGGAGTGAAGCCTATACTCGACGTGTTGCTGGAGAAACGAACAGACAATTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTGTTGCGAACAGACGATATAGTCTATGAAGTTTCTGGAGATCAAAATCTGAGTACTGCACTTGTGGACGCTTTCCAACACGGCGATTATCGAACTAGGCAGATTGCTGAGCGAGCCCTCAAGCATGTTGATAAGATACCTAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2445 0.4495 MMSGSWDGNNDPGSQSDDSLLFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRKLVCPLTLRELKSAELNPSLALRNTIEEWTARNEAAQLDMARRSLNTGGPEKEALMALRYVQHICRRSRSNKHIVRSAGLIPMIVDMLKSSSRKVRCRALETLRIVVEGDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSTSETLCEKIGSVNGSILILVGMTSSKSEDVSTVEKADKTLENLEKYENNVRQMAENGRLQPLLTHLLEGPPETKLSMAGILGELVLDNDVKVFVARTVGSSLIDIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPHLLPTRLKEVSATILASVVNSGEDFDMIPLGPDDQTLVSEDIVHKLLHLISNTGPAIECKLLQVLVGLASSPTTVLSLVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGPELADALRGSVGQLSSLVKVISENIGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFLMAISKVIAIRQGEIRGTRFVTPFLEGLMKIVARVTYVLADEPDAVALCRDQNLAALFIELLQTNGLDTVQMVSAIALENLSLESKNLTKLPEMPEPAFCASFFSCFSKPPVITGLCRIHRGKCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALCTVIDDGVDIEQGVLVLCEAEGVKPILDVLLEKRTDNLRRRAVWAVERLLRTDDIVYEVSGDQNLSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0227 814 Gene3D - 575 804 IPR011989 -
Psa5g0227 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 116 IPR013083 -
Psa5g0227 814 CDD RING-Ubox_PUB 34 79 IPR045210 -
Psa5g0227 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 812 - -
Psa5g0227 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Psa5g0227 814 SUPERFAMILY ARM repeat 408 800 IPR016024 -
Psa5g0227 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Psa5g0227 814 SUPERFAMILY ARM repeat 122 445 IPR016024 -
Psa5g0227 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Psa5g0227 814 Gene3D - 320 487 IPR011989 -
Psa5g0227 814 SMART arm_5 266 307 IPR000225 GO:0005515
Psa5g0227 814 SMART arm_5 673 714 IPR000225 GO:0005515
Psa5g0227 814 SMART arm_5 591 632 IPR000225 GO:0005515
Psa5g0227 814 SMART arm_5 182 222 IPR000225 GO:0005515
Psa5g0227 814 SMART arm_5 140 180 IPR000225 GO:0005515
Psa5g0227 814 SMART arm_5 348 393 IPR000225 GO:0005515
Psa5g0227 814 SMART arm_5 718 760 IPR000225 GO:0005515
Psa5g0227 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 812 - -
Psa5g0227 814 Gene3D - 122 319 IPR011989 -
Psa5g0227 814 Coils Coil 257 277 - -
Psa5g0227 814 SUPERFAMILY RING/U-box 25 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0227 Psa-Chr5 16056435 16063108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0227 3 814 U-box Gene Family AT1G76390 65.233 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0227 - - gmx:100789746 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0227 5 16056435 16063108 Psa5g0227 5 16056435 16063108 ECH