Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0222 ATGAAAGGAGGAAAGTCCAAGGGTGAATCGAAGAAAGCTGAAACGAAGCTTGCGGTGAATAAGAAGGGTGCTCCCGCCACAAAGGGCGGAAAGAAACCAGCCAAGGGAAAGGAACCAAAGGACCCTAACAAGCCGAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGGAGGACTTTAGGAAGCAGTTCAAAAAGGAAAACCCTGACAACAAAGCTGTGTCTGCAGTGGGCAAAGCTGCTGGGGCAAAATGGAAGTCAATGACTGAAGCTGAGAAAGCACCATATGCTGCTAAGGCAGAGAAAAGGAAGGCTGAATATGAGAAGAGCATGAAGTCCTATAACAAGAAACAAGCTGAAGGTCCAGCTGCTGTTGAAGAAGAAGAAGAATCCGAGAAATCAGAATCTGAGGTGCATGATGAGAATGATGATGAGGAAGAAAGTGAGGAGGAGGATGATGACGAGTAG 465 0.4645 MKGGKSKGESKKAETKLAVNKKGAPATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMEDFRKQFKKENPDNKAVSAVGKAAGAKWKSMTEAEKAPYAAKAEKRKAEYEKSMKSYNKKQAEGPAAVEEEEESEKSESEVHDENDDEEESEEEDDDE* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0222 154 MobiDBLite consensus disorder prediction 64 154 - -
Psa5g0222 154 SMART hmgende2 44 115 IPR009071 -
Psa5g0222 154 Coils Coil 96 116 - -
Psa5g0222 154 MobiDBLite consensus disorder prediction 94 114 - -
Psa5g0222 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Psa5g0222 154 MobiDBLite consensus disorder prediction 1 18 - -
Psa5g0222 154 SUPERFAMILY HMG-box 36 118 IPR036910 -
Psa5g0222 154 MobiDBLite consensus disorder prediction 1 51 - -
Psa5g0222 154 Coils Coil 123 150 - -
Psa5g0222 154 Gene3D High mobility group box domain 29 127 IPR036910 -
Psa5g0222 154 MobiDBLite consensus disorder prediction 31 45 - -
Psa5g0222 154 MobiDBLite consensus disorder prediction 124 154 - -
Psa5g0222 154 CDD HMGB-UBF_HMG-box 45 111 - -
Psa5g0222 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Psa5g0222 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 153 - -
Psa5g0222 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 153 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0222 Psa-Chr5 15910760 15913335 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa5g0222 HMG_box 3.8e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0222 K25507 - lang:109352139 156.762