Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0219 ATGGATGCAGAATGTAAAGTTATATGGAATGTTATTAAGTTGGAGAAGAAGATGAAGGCCAAGGACTTGGAAATCATGTCCGATTGCCAAATAGTTGTGGAGATGATTGAAAGCAAACAGGAAAGTATGCATGAGGTGGGTAGCAACATCAACAGTAAGGAGAGGCGTGATAGGAAGGGAAATTCACAAGTGAGTGAGGATAACAACCCTGTGGAAAGGAGAGTGACACAGGCTGGGGAGAAGGTTGTTGGATACGAGAATGTTCAACGTTGCAAAAGAGAAGATTTACAAAGAAGAAAAAAAGGGAGAGAAATGGAGACAGAAGAACAACCGGAGAGTTGCTCAAAATCAAATGCCATTATCGGAGGAAGCCTGTATGTAAAAGTGATGACCGACGAACAACTGGAACTTCTCCGGCAACAGATTTCCGTCTACACAGCCATTTCCGATCAGCTTATTCAGATGCACAAATCCATCACCACACAACACGATCTCGCTGGATTGAGGCTCGGCAATCTGTACTGTGATCCACTCATGGCGTGTTCTGGACACAAGATATCATCCAGGCAGCGATGGACTCCGACTCCTCTCCAGCTTCAGATACTCGAACGGATTTTCGATGAAGGAAATGGAACTCCTACTAAACAGAAGATCAAAGATATAGCTAGTGAGCTTGGACAACACGGTCAAATATCTGAGACTAATGTTTATAATTGGTTTCAGAACAGAAGAGCTCGTTCGAAGCGGAAGCAATCGGTTCATACGACGAATCAGGTTGAACCCGAGGCGGAGATGGAAGTTGAGTCGCCGAAAGAGAAAATAACTCGCGGGGATAACGAGCATGATCAGTCCTTTGAGAATTTATCATCACCTCATAGGGTTAAGGATATGTATATTCAGAGTCCTGATATAGGATTGGAGCAGTTGTTGGGTAAAATTGAAGTTGCAGGCTGTTATAGTTCTTACTTCCTTTGA 975 0.4349 MDAECKVIWNVIKLEKKMKAKDLEIMSDCQIVVEMIESKQESMHEVGSNINSKERRDRKGNSQVSEDNNPVERRVTQAGEKVVGYENVQRCKREDLQRRKKGREMETEEQPESCSKSNAIIGGSLYVKVMTDEQLELLRQQISVYTAISDQLIQMHKSITTQHDLAGLRLGNLYCDPLMACSGHKISSRQRWTPTPLQLQILERIFDEGNGTPTKQKIKDIASELGQHGQISETNVYNWFQNRRARSKRKQSVHTTNQVEPEAEMEVESPKEKITRGDNEHDQSFENLSSPHRVKDMYIQSPDIGLEQLLGKIEVAGCYSSYFL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0219 324 PANTHER WUSCHEL-RELATED HOMEOBOX 13 116 324 IPR044559 GO:0003700
Psa5g0219 324 MobiDBLite consensus disorder prediction 48 63 - -
Psa5g0219 324 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 116 324 - -
Psa5g0219 324 MobiDBLite consensus disorder prediction 264 287 - -
Psa5g0219 324 MobiDBLite consensus disorder prediction 247 287 - -
Psa5g0219 324 CDD homeodomain 189 251 IPR001356 GO:0003677
Psa5g0219 324 Gene3D - 191 256 - -
Psa5g0219 324 SMART HOX_1 187 254 IPR001356 GO:0003677
Psa5g0219 324 MobiDBLite consensus disorder prediction 40 75 - -
Psa5g0219 324 Pfam Homeodomain 189 249 IPR001356 GO:0003677
Psa5g0219 324 ProSiteProfiles 'Homeobox' domain profile. 185 250 IPR001356 GO:0003677
Psa5g0219 324 SUPERFAMILY Homeodomain-like 188 252 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0219 Psa-Chr5 15714342 15716941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0219 125 322 Wox Gene Family AT4G35550 50.661 9.15e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa5g0219 Homeodomain 1.4e-18 CL0123