Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0216 ATGTCACACAACAACCACCAAGCATCATCCTCCACTCCCGGTCGTCGGCCTCCAGGGCGTCCACTTGGCTCCAAGAACAAACCCAAAATGCCTATCATAGAAAACCGTGACAATCCTAATGCACTAAATTCTCATGTCCTTGAGATCACTTCTGGATCCGACGTGTCACAAAGTCTCCTTGATTACGCTCGTCGTCAAGGGAGGGGCATCAATATCCTCTGCGGAAATGGAATAGTGACGAATGTTAGGCTTCTTCAACCAATAGGAAATATTATAATCCTTCAGGGAAATTTTGAGATACTTTCGATATCAGGTACAGTTTTTCCTTCGGAAACACTATCAAGTGCAGGTAGATTGATAGTTTATTTAATGGGGACATCAGGGCAGGCAATTGGGGGGAGTGTCATGCCCCCTTTAATGGCTTCAGGTCCAGTGACTTTGATGGCTGCTTCTTTTGCAAATACAACACCTGAAAAGATTTCTTCGGTGACCAATGATCCCATAGAAAATGAGCGTGAACATGTGACTAACAGGGATACTGACTTGCTCAATGCTGGAGAATCAACATCTGAAATGATAAACATGATGAGTTCCCAAACTCACTATTTCTCATCTTCTACCCAGGGTCGTAAATTCGGATAA 642 0.4377 MSHNNHQASSSTPGRRPPGRPLGSKNKPKMPIIENRDNPNALNSHVLEITSGSDVSQSLLDYARRQGRGINILCGNGIVTNVRLLQPIGNIIILQGNFEILSISGTVFPSETLSSAGRLIVYLMGTSGQAIGGSVMPPLMASGPVTLMAASFANTTPEKISSVTNDPIENEREHVTNRDTDLLNAGESTSEMINMMSSQTHYFSSSTQGRKFG* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0216 213 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 190 IPR014476 GO:0003680
Psa5g0216 213 PIRSF ESCAROLA 1 211 IPR014476 GO:0003680
Psa5g0216 213 MobiDBLite consensus disorder prediction 1 31 - -
Psa5g0216 213 Pfam Plants and Prokaryotes Conserved (PCC) domain 44 153 IPR005175 -
Psa5g0216 213 ProSiteProfiles PPC domain profile profile. 39 174 IPR005175 -
Psa5g0216 213 CDD DUF296 43 152 IPR005175 -
Psa5g0216 213 Gene3D - 43 167 - -
Psa5g0216 213 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 7 190 - -
Psa5g0216 213 SUPERFAMILY AF0104/ALDC/Ptd012-like 39 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0216 Psa-Chr5 15616188 15617046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0216 9 160 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 52.761 7.90e-51 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0216 - - vvi:100242785 178.718