Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0210 ATGTCGAGATCTGGATTAAGGAACGAGTGTGAGTTCTCTCCTGAATTCGACAAACCTTATGAATCACCACCACAACCACATTTATTGGGTTCACAAAGTACCTATCCTCCCCATCTTTCTCCTCTTCCTTCTGAACATATAAATCATCCGTCTGAAATTATTAGCCACTCTGATGTGCCATTTTCTCCAACTGCTCCTTTGCCTCCGACCTCAACCAACACTCCTAAGAAGTGTAGAGGTCGGCCTTTCGGTTCTCGCAACAAAAAGCCATGTATGAATATCATTAACGCAAATGGGGCAGTGTCTAAAATAAAATTTTCTCAATCTCCGTCATTTGTTGAAACTGTTACCTATGAGGGACGATTTGAGATCATATCACTAAAAGGTTCTGTGTTTATTGGAACAAATGAAAGTGAACAAAAAAGAGTTGGTGGAGTAAAGGGGTCTTTTGTTTCATTATCAAATAGTCATGTATTTGGTGGTAAAATTGTTGATGTTTTGATTGCTGCTACTTCAGTTCAGATAATACTGGGGAGTTTCTATTCGGAGGATCGAGAAGTAGTATTGTCCGATCCAAATGAGCCTCATGTAGAAGGTCCAAGCAACCCTCTATCGGTGGTTCATCCATCAACATGA 636 0.4025 MSRSGLRNECEFSPEFDKPYESPPQPHLLGSQSTYPPHLSPLPSEHINHPSEIISHSDVPFSPTAPLPPTSTNTPKKCRGRPFGSRNKKPCMNIINANGAVSKIKFSQSPSFVETVTYEGRFEIISLKGSVFIGTNESEQKRVGGVKGSFVSLSNSHVFGGKIVDVLIAATSVQIILGSFYSEDREVVLSDPNEPHVEGPSNPLSVVHPST* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0210 211 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 180 IPR005175 -
Psa5g0210 211 MobiDBLite consensus disorder prediction 1 47 - -
Psa5g0210 211 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 186 - -
Psa5g0210 211 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 94 187 IPR039605 GO:0003680
Psa5g0210 211 CDD DUF296 94 180 IPR005175 -
Psa5g0210 211 Gene3D - 83 192 - -
Psa5g0210 211 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 94 187 - -
Psa5g0210 211 ProSiteProfiles PPC domain profile profile. 58 202 IPR005175 -
Psa5g0210 211 MobiDBLite consensus disorder prediction 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0210 Psa-Chr5 15207901 15210834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0210 94 181 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 46.667 2.14e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0210 - - cam:101507512 106.301