Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0209 ATGATGTTAGCAATGGAAGAAGTACTGTGTGAACTTAGTGATCATGAAAAGAAAAACGACCAAGGTCTTCCACCTGGTTTCAGGTTTCACCCTACCGATGAAGAACTCATTACCTTTTATCTAGCTTCCAAAGTTTTCAAAAACACTTTTTTCAATAATGTCAAGTTTGCTGAAGTTGACCTCAACAGATGTGAGCCATGGGAACTTCCAGATATGGCAAAGATGGGAGAAAGAGAGTGGTATTTGTTCAGTTTGCGAGACAGAAAATACCCGACTGGTCTTAGAACAAATAGAGCAACTGGAGCTGGTTACTGGAAAGCCACTGGAAAGGACAAAGAAGTTTACAGTAACAACAGCACTAGGGCTTTACTTGGCATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTATCGCTTACACACTCATCTTTCACCTTCAACTTGCAAGGAAGAGTGGGTGATATGCAGGATATTTCATAAATCGGTGGAAAAAAGAAGTTCACTATTACTACAAGTTCAAGGACATTTAGGTGTTCATAATAATTCTAATTTAACCCCCCCAAAAAGCTGTCTACCCCCTCCTCTTCCTCCACCTTCATTTACACACTCTCATAATAATTTTCCATTACATGCATTTCAACCTTCATTCCAAGTTACAGACACCAGAAACAACAATAATCCATCTTTGGAACTACTCTTCAAGTCACAAACCATTCCAAAAACCGAGGCTATGTTCTATGAACAATACCAGCCACAATCCATAGAGGAAGCTATTAACCTGAGATGGAATATTGACAACAATAATAGTAATGATTTTCAAAACCTATCATTACCTGTTGAGATGGATGCTGAACTGATTGCATTCTCAGGAGCTGCTGCTACAGATGATGAATTTACGTCAACACCCTTTATTAACAGTAGAGGAATAGTAGCCTTAGATGCTCCTATGGGAATTGATTCTTGGCCACAGGCTCAGCTTGTTTAA 1023 0.3969 MMLAMEEVLCELSDHEKKNDQGLPPGFRFHPTDEELITFYLASKVFKNTFFNNVKFAEVDLNRCEPWELPDMAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSNNSTRALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLHTHLSPSTCKEEWVICRIFHKSVEKRSSLLLQVQGHLGVHNNSNLTPPKSCLPPPLPPPSFTHSHNNFPLHAFQPSFQVTDTRNNNNPSLELLFKSQTIPKTEAMFYEQYQPQSIEEAINLRWNIDNNNSNDFQNLSLPVEMDAELIAFSGAAATDDEFTSTPFINSRGIVALDAPMGIDSWPQAQLV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0209 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 283 - -
Psa5g0209 340 Gene3D NAC domain 32 177 IPR036093 GO:0003677|GO:0006355
Psa5g0209 340 SUPERFAMILY NAC domain 19 173 IPR036093 GO:0003677|GO:0006355
Psa5g0209 340 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Psa5g0209 340 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Psa5g0209 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 13 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0209 Psa-Chr5 15074674 15076568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0209 1 186 NAC Transcription Factor Family AT1G76420 70.588 9.55e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g0209 NAM 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0209 - - mtr:MTR_3g116070 421.009