Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0203 ATGACTCGTCCTTTCAGAATTCTCGACGAGCTCAACTCGTCTTCCTCCGACTCACCTGATTCCGCCGTCGTTGATTCCGACTTCGTCGTCATCCTCGCCGCTCTCCTCTGCGCTCTCATCTGCGTTCTAGGTTTGGTTACCGTCTCCCGTTGTGGCTGTCTCCGTCGCTTACGTCTCCCTTCCCCCGCCCTCGCTTCTCAAACTACACCTCCTTCTGCAGCTAACAAAGGCGTCAAGAAGAAGGTTCTGAAATCTCTTCCCAAGGTTACAGCGACGGAAGAATCCGCGGTTAAATTCTCCGATTGCGCTATCTGTCTGAGCGAATTCACCGCCGGAGATGAAATCCGAGTGTTGCCTCAGTGCGGCCATGGCTTCCACGTGTCATGTATCGATGCGTGGCTCAGATCTCATTCTTCGTGTCCGTCTTGCCGTCAGATTCTGGTAGTATCTAGATGCGATAAGTGCGGCGGAATTCCCGCTCCCGCTCCCGCAACTACCGCTGTCGGCGCCAGCTCTACGCCGGCGCCGGAATCTGAAGTTAGGTTAAAGGTAAGGGAGGACGATGGAAACAGTTTCTTGCCTTAG 585 0.5453 MTRPFRILDELNSSSSDSPDSAVVDSDFVVILAALLCALICVLGLVTVSRCGCLRRLRLPSPALASQTTPPSAANKGVKKKVLKSLPKVTATEESAVKFSDCAICLSEFTAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPAPATTAVGASSTPAPESEVRLKVREDDGNSFLP* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0203 194 MobiDBLite consensus disorder prediction 166 194 - -
Psa5g0203 194 SUPERFAMILY RING/U-box 82 150 - -
Psa5g0203 194 SMART ring_2 102 143 IPR001841 -
Psa5g0203 194 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Psa5g0203 194 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 184 - -
Psa5g0203 194 Pfam Ring finger domain 101 144 IPR001841 -
Psa5g0203 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 148 IPR013083 -
Psa5g0203 194 PANTHER RING-H2 FINGER PROTEIN ATL8 1 184 - -
Psa5g0203 194 CDD RING-H2_PA-TM-RING 101 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0203 Psa-Chr5 14893744 14895033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0203 5 194 C3H Transcription Factor Family AT1G20823 59.091 5.44e-67 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0203 - - gmx:100794614 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0203 5 14893744 14895033 Psa5g0203 5 14893744 14895033 ECH