Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0198 ATGGAGGGTGGTGAGAGAATCGGAGAAGATATGGATCTCGTTCATTCTGAAAATGCTGCTGCTGCTGCCGCTGTTGGTGTTGGTTCCGTTTCTCAGGATCAAGAAATGGTTGATCAAGCTGATGCTGATACAACAATTTCAAATGTCCATTCTACCCCTACTCCTCAGGCTAAAGTTAAGAATGTGACAGAAATGAATAATCATAGTGTGATAAACAGTGCTGGCGAGATGAGTGGTTATGATGAGACTGGTACTGCTATGGAACGAGAAGCGTTTATGAAAGAGCTTGAGAGTTTTTATAGATCGAGGTCGTTAGAATTTAAGCCTCCTAAGTTTTATGGAGTGCCGTTGAATTGTCTCAAGTTATGGAGAGCTGTTATCAAACTGGGTGGCTATGAATTGGTAACTGGATCGAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCTCCTAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCGCTTTTAGAGTATGAAAAGCATAAGAGAGAGACCGGGGAGCTACAGCTCCCTGTTGGATCACTCCATCAACCTTCAAGTGTGGAAAAAGAGACCACTGTTTATCAGGCTCCAGGCTCAGGTAGAGCACGAAGGGATGCAGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGTCAGCTGTTAAGGACAAGAACTTCAGTCCTACACAAAAACGTGAAAAGAACCTCAAAAGTATTGGTGTGATCAACAAACAGAGGATGCCATCTGGTATGGACCATGCTGACAAAACTGCAAATATAGAAGGAGACAGGCAATTGGTCACTGCAGTAGTGGATATTGGACCCCCAGCTGACTGGGTTAAGATCAATGTGCGGGAAACGAAGGATTGTTTTGAAGTGTATGCGCTGGTTCCTGGGCTCCTTCGCGAGGAGGTGCGAGTTCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTACGCCAGAACATGTTGACAATCCATGGGGTATCACCCCCTTCAAAAAGGTTGTGAACTTACCTTCGCGAATTGATCCACTTCAGACATCTGCCATTGTTAGTTTGCACGGCCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTATGA 1161 0.4574 MEGGERIGEDMDLVHSENAAAAAAVGVGSVSQDQEMVDQADADTTISNVHSTPTPQAKVKNVTEMNNHSVINSAGEMSGYDETGTAMEREAFMKELESFYRSRSLEFKPPKFYGVPLNCLKLWRAVIKLGGYELVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGSLHQPSSVEKETTVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAESAVKDKNFSPTQKREKNLKSIGVINKQRMPSGMDHADKTANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGTPEHVDNPWGITPFKKVVNLPSRIDPLQTSAIVSLHGRLFVRVPFEQGAV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0198 386 SMART bright_3 87 178 IPR001606 GO:0003677
Psa5g0198 386 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 35 383 - -
Psa5g0198 386 SUPERFAMILY ARID-like 82 183 IPR036431 GO:0003677
Psa5g0198 386 SUPERFAMILY HSP20-like chaperones 294 381 IPR008978 -
Psa5g0198 386 Gene3D - 273 385 IPR008978 -
Psa5g0198 386 Pfam ARID/BRIGHT DNA binding domain 88 173 IPR001606 GO:0003677
Psa5g0198 386 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 35 383 IPR045147 GO:0006357
Psa5g0198 386 ProSiteProfiles ARID domain profile. 86 177 IPR001606 GO:0003677
Psa5g0198 386 Pfam Hsp20/alpha crystallin family 301 382 IPR002068 -
Psa5g0198 386 Gene3D - 86 185 IPR036431 GO:0003677
Psa5g0198 386 CDD ACD_sHsps_p23-like 301 380 - -
Psa5g0198 386 CDD ARID 88 173 - -
Psa5g0198 386 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 285 386 IPR002068 -
Psa5g0198 386 SMART ARID_2 83 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0198 Psa-Chr5 14530801 14537684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0198 73 383 ARID Transcription Factor Family AT1G76510 71.474 9.29e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa5g0198 ARID 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0198 - - adu:107461292 565.844