Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0196 ATGACTCTATGTGCGAGGTGTTTTGTTCGCGGCAGCTATAAAGTTGGGACGAGTAATACTGATTTCAAGAGAGTGGAGATAAGTGAGGAAACCAAACCTGATTGGACTGAGAAGGAAACACTGAAACTTCTTGAATGTATTACGAATTTTGGTGATGATTGGAAGAGGGTTTCTCATCATGTTATTGGTAGAACTGATAAGGAATGCGTTGCTCGCTTTCTCAAGCTTCCTTTTGGTGATCAGTTTGTGCATTCTCAACGCCTCGAGTCTGCTCATCTCGATGATGATGGTTGTTCTGATCCGTTGAAGCCTTCCGTTGATGCTGGATGTGAATCAGAAACTGCTGGCTTGGATAGATCTAGTAAGAGAATGCGTCTCACGCCTCTTGCCGATGCAAGCAATCCTATCATGGCGCAGGCTGCTTTCCTTTCTGCTTTGGCAGGGACAGAGGTTGCACAAGCTGCAGCTCAAGCTGCTCTGACAAGTTTGTCCGATGTTTACAAGTCAAGTAGAATTAATCATCGGTCATTTCCAAAGCAAGATGCTGGTGTTGCATCAAATGGCGTTAATGCTTCAGATTCTATCCAAGGATCTCTACTGCGTGCAAATTTAGAGCGCGAGAAGGAAGAATCAGATGTAGAAAAAGCAATTTCTGAGATTGTAGAAGTTCAGATGAAAAATATCCAGGACAAGCTTATCAATTTTGAAGATTTAGACCTGTTAAGGGAAAAAGAATGCCAGCAGTTAGAGCAAGCGAAGAGTTTGTTTTTCCTTGATCAGCTTAATCTTTTATTTCGCAAAACATCCGCATCAACAACCGGAGAAGGAAATCATGTAAAAAGGAATTGA 849 0.4217 MTLCARCFVRGSYKVGTSNTDFKRVEISEETKPDWTEKETLKLLECITNFGDDWKRVSHHVIGRTDKECVARFLKLPFGDQFVHSQRLESAHLDDDGCSDPLKPSVDAGCESETAGLDRSSKRMRLTPLADASNPIMAQAAFLSALAGTEVAQAAAQAALTSLSDVYKSSRINHRSFPKQDAGVASNGVNASDSIQGSLLRANLEREKEESDVEKAISEIVEVQMKNIQDKLINFEDLDLLREKECQQLEQAKSLFFLDQLNLLFRKTSASTTGEGNHVKRN* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0196 282 CDD SANT 35 76 IPR001005 -
Psa5g0196 282 Gene3D - 31 80 - -
Psa5g0196 282 ProSiteProfiles Myb-like domain profile. 27 77 IPR001005 -
Psa5g0196 282 SUPERFAMILY Homeodomain-like 32 83 IPR009057 -
Psa5g0196 282 Pfam SWIRM-associated region 1 201 264 IPR032451 -
Psa5g0196 282 Pfam Myb-like DNA-binding domain 33 76 IPR001005 -
Psa5g0196 282 PANTHER SWI/SNF COMPLEX-RELATED 9 276 - -
Psa5g0196 282 Coils Coil 199 226 - -
Psa5g0196 282 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 9 276 - -
Psa5g0196 282 SMART sant 31 79 IPR001005 -
Psa5g0196 282 ProSiteProfiles SANT domain profile. 30 81 IPR017884 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g0196 SWIRM-assoc_1 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0196 K11649 - gmx:100779777 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0196 5 14380034 14381383 Psa5g0196 5 14380034 14381383 ECH