Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0194 ATGGCGTATCAATCGATTCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCAGGGTTTCAATTGTTGAATTCTCCGTTTGGAGATACCACTTATACTAAGGTATTTGTTGGGGGATTGGCGTGGGAGACGCAGAGCGAAACTATGCGCCGTTACTTTGATCAATTTGGGGATATTCTTGAAGCCGTTGTTATTACTGATAAGAATACAGGAAGATCTAAAGGCTATGGTTTTGTGACTTTCCGTGATCCAGAAGCTGCTAGGAGAGCCTGTGCTGATCCAAGTCCTGTTATTGATGGTAGAAGGGCTAACTGTAATTTGGCTTCGCTTGGTCGTCCGCGACCTCCTATCCCTTATGGACGGATAAGACCAGCATCCCCTTATGTTGGAAGTTTGCAACCAGCTCGTGGTGCTTACGTTGGAAGTTATGGCTACCAGCAACCACTTTCCTATGGCTATCAACAAGGAATGGTTTATCCTCCTTATGGGTATACGGCATATGGACCTGAATACGTCTACCCACAGAGTATGTACAACCCTTACGTGGGTCAACAATACCTTCAGATATATGGCGTGCCGGGTGGGGCGAACACAGCCATTTATCCTTATGGACAATTGGGTCAAGCTATTCCTGGCGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGCTCATCAGATTGTTCCCTATGGTGGATCCAATGTTAATGCAATGACAACTTCACCTGTGCCTGCCATTCAAGCCTCATATCCTAGCGGAATCGGTGCACCCGTTCCAGGCCAACAATTTATTGTTTCTCCTCAGTTCATACAAGGTAGCGGTCCTGACCAAACAGCTGGTTGA 846 0.4681 MAYQSIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFDQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPIPYGRIRPASPYVGSLQPARGAYVGSYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQSMYNPYVGQQYLQIYGVPGGANTAIYPYGQLGQAIPGGHGYTAMQGYTVPAHQIVPYGGSNVNAMTTSPVPAIQASYPSGIGAPVPGQQFIVSPQFIQGSGPDQTAG* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0194 281 PANTHER BOULE-RELATED 1 277 IPR037366 GO:0003729
Psa5g0194 281 Gene3D - 4 119 IPR012677 -
Psa5g0194 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Psa5g0194 281 SUPERFAMILY RNA-binding domain, RBD 31 119 IPR035979 GO:0003676
Psa5g0194 281 SMART rrm1_1 33 105 IPR000504 GO:0003723
Psa5g0194 281 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 277 - -
Psa5g0194 281 CDD RRM_RBM24_RBM38_like 32 107 - -
Psa5g0194 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0194 Psa-Chr5 14357706 14363302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0194 21 186 C2H2 Transcription Factor Family AT2G19380 31.461 1.81e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0194 - - gmx:100782606 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0194 5 14357706 14363302 Psa5g0194 5 14357706 14363302 ECH