Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0172 ATGGCTGAAGAGTACCGATGCTTCGTTGGTGGACTTGCTTGGGCCACCGACAACGACGCTCTCGGCAAAGCGTTTTCTTCCTTTGGCGAAATCGTCGAATCGAAGGTTATCCTTGATCGTGAAACTGGAAGATCGAGAGGATTTGGATTCGTGACCTTTGCATCGGAGCAATCAATGAAAGACGCCATTGAAGGGATGAACGGTCAGGATCTAGATGGCCGTAACATCACTGTGAACGAGGCTCAGAGCCGCGGCAGTGGTGGTGGTGGTGGAGGTGGATACCGTGGAGGCGGCGGTGGAGGATATGGAGGTGGCGGTGGTGGATATGGAGGCGGTGGAGGTTATAGCCGTGGTGGTGGTGGTGGAAGTTATGGAGGAGGTGGAGGTCGTCGGGAAGGAGGTGGTGGTGGATATGGTGGAGGAGGTGGTGGTTACGGAGGAGGTGGAGGTGGCGGTGGATATGGTGGAGGAGGTGGACGGGACCGTGGTTATGGAGATGGTGGATCTCGGTACTCAAGAGGCGGAGGCGGTGGTGGTTCCGAAGGAGATTGGAGGAGTTAA 561 0.5633 MAEEYRCFVGGLAWATDNDALGKAFSSFGEIVESKVILDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGGYRGGGGGGYGGGGGGYGGGGGYSRGGGGGSYGGGGGRREGGGGGYGGGGGGYGGGGGGGGYGGGGGRDRGYGDGGSRYSRGGGGGGSEGDWRS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0172 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 83 IPR000504 GO:0003723
Psa5g0172 186 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 3 127 - -
Psa5g0172 186 Gene3D - 1 115 IPR012677 -
Psa5g0172 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 76 IPR000504 GO:0003723
Psa5g0172 186 PANTHER GEO13361P1-RELATED 3 127 - -
Psa5g0172 186 MobiDBLite consensus disorder prediction 165 186 - -
Psa5g0172 186 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Psa5g0172 186 SMART rrm1_1 6 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0172 Psa-Chr5 11429623 11431360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0172 7 84 Eukaryotic Initiation Factors Gene Family AT4G34110 30.769 3.33e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0172 - K13195 gmx:100806292 147.517