Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0166 ATGGCAACTTCCGGCGCTTCCTTGCCGTTGCTAACTAACCGAACATCTATCGCCGGTCTCAAATTCTACGTCTTAGTCATCATTTTCCTCGCAATCGCAGTCTCGATTCTTCTCATCACCGTTCTCTGCATTCGCCGGAACCGAAGCTCAAAGAAGAGCCAAATGCAAGTGAAAGTGAAGCATAGCTCCGGCACAATTCCGCTCGTTTCTAAGGAGATCGTGGAGGTGATCAAGATCGGAAATGTTATTGATGATGATCCGAAGATGCAGAAGCAAGTGGAGTGCGAGATCGAAGAGAGTAGTAGTGTGTCGGTGGAGTCTCCGTCTCCATCTCCGGAGAACATAGGTTGGGGTCGGTGGTACACTTTGAAGGAATTGGAGAATGCGACCGGTAGATTTTCCGATGGGAACGTGATCGGAGAAGGAGGTTATGGAATTGTATACAGAGGAATTCTTCAAGACGGTTCTGTGGTTGCTGTGAAGAATCTTCTTAACAATAAGGGTCAAGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCATAAGAATTTGGTAGGGCTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAATGGAAATTTAGAGCAGTGGCTACATGGTGATGTAGGACCTATTAGCCCCTTGACATGGGATATAAGAATGAAGATTGCAGTTGGCACTGCAAAAGGGCTAGCCTATTTGCACGAAGGCTTAGAACCCAAAGTTGTCCACAGAGACGTAAAATCCAGCAATATTCTTTTGGACAAAAAATGGAATGCAAGAGTATCAGATTTTGGACTTGCCAAGCTCTTAGGCTCTGGCAAAAGCTATGTTACAACCCGTGTAATGGGGACATTTGGATATGTTTCGCCCGAGTATGCAAGCACGGGAATGCTTAACGAGAGCAGTGATGTATATAGTTTTGGGATTCTACTCATGGAGCTAATTACAGGAAGAAGCCCCATTGATTATTCTAGACCACCTGCAGAGATGAACTTGGTTGATTGGTTTAAAGGAATGGTAGCAAGTCGTCGCGGTGATGAACTACTTGATCCTTTAATTGAGATTCAACCCTCTCCGAGGTCTTTGAAGCGTGCTTTACTTGTTTGTCTGCGTTGCATAGATTTGGATGCCAATAAGCGACCAAAGATGGGGCAAATTGTTCATATGCTCGAGGCAGATGATTTTCCTTTTCGTTCT 1239 0.4463 MATSGASLPLLTNRTSIAGLKFYVLVIIFLAIAVSILLITVLCIRRNRSSKKSQMQVKVKHSSGTIPLVSKEIVEVIKIGNVIDDDPKMQKQVECEIEESSSVSVESPSPSPENIGWGRWYTLKELENATGRFSDGNVIGEGGYGIVYRGILQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGNLEQWLHGDVGPISPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNARVSDFGLAKLLGSGKSYVTTRVMGTFGYVSPEYASTGMLNESSDVYSFGILLMELITGRSPIDYSRPPAEMNLVDWFKGMVASRRGDELLDPLIEIQPSPRSLKRALLVCLRCIDLDANKRPKMGQIVHMLEADDFPFRS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0166 413 SMART serkin_6 133 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0166 413 PANTHER OS01G0323000 PROTEIN 10 413 - -
Psa5g0166 413 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524
Psa5g0166 413 PANTHER OS03G0227900 PROTEIN 10 413 - -
Psa5g0166 413 ProSiteProfiles Protein kinase domain profile. 133 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0166 413 SUPERFAMILY Protein kinase-like (PK-like) 108 405 IPR011009 -
Psa5g0166 413 CDD STKc_IRAK 139 405 - -
Psa5g0166 413 Gene3D Phosphorylase Kinase; domain 1 98 208 - -
Psa5g0166 413 Gene3D Transferase(Phosphotransferase) domain 1 209 409 - -
Psa5g0166 413 Pfam Protein kinase domain 134 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0166 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0166 Psa-Chr5 10945722 10948161 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0166 119 405 Receptor kinase-like Gene Family AT4G02010 48.110 9.83e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Psa5g0166 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0166 - - gmx:100779420 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0166 5 10945722 10948161 Psa5g0166 5 10945722 10948161 ECH