Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0164 ATGGTGGATCGAAGATTCATACTGTGGTTTGTGCTGTTGCTATTGTTTTTGTGTTTTGAGGTAACATTGGAACAGATTGAGATTCAGCCATTGAGTTCACCTCAGGAACGTGCTGCACTTCTTCAACTTCGAGCTTCTTTGGGTTTGAGAACCAAAGAATGGCCAAGAAAGCCTGACCCTTGTTTAATCTGGACTGGTATTTCGTGTCGGAATGGCCGTGTTGTTGGGATCAATATATCGGGTTTTAGAAGAACAAGAATTGGTAGAATAAACCCTCAATTTTCTGTTGATGCTTTGGTTAATTTCACTTTGTTGCAGTCTTTTAATGCCTCTGGTTTTTACCTTCCTGGTTCTATTCCTGATTTGTTTGGGTTTAGTCTTGGGACGCTACGCGTGCTTGATCTTCGTTCTTGTTCGATTGGAAATGCTATTCCGAATTCTATTGGGAATTTGACTAGGCTTACTGCTCTTTATCTTTCTGATAATAATCTTACTGGAAATGTTCCTGATAGTTTAGGTCAACTCTCGTCGCTTTCGGTTCTTGATCTCTCGGGGAATTCGCTTACGGGGATTATACCAGAGTCTTTTGGCTTTCTTGCGAATCTTTCTTCACTTGATTTGTCGGGTAATTTTTTTTCCGGGCCTGTTCTTTCGGGTTTAGGGAATCTTTCTAGGTTACAGTACTTGAATCTTTCTGGTAATAGTTTGAATTCTTTGCCTGCACAATTGGGAGGTCTCGTTAGCTTGGTTGACCTTGATCTTAGTGAGAACTCTTTCTCCGGCAGCATTCTTCCGGATTTGAAAGGGTTGGGGAACTTGCAGATTATAGTTGTGAGGAGAAATAATTTTACCGGTTCTTTGCCTGTTGAGTTGTGGTCATTGCCGAGATTGACGTTCGTAGATGTGTCTTCCAATAGCTTCAGTGGTTTGCTTCCCAATTCTAGTTCCTCTGTCGATTCTACTGTTGCGGTTCTAAATATATCTCATAACATGTTTTATGGAGGTCTTAAACCTGTGCTCAGAAGGTTCAGTTATGTTGATCTTGCAAACAATTATTATGAGGGTAGGGTTTTGGATTTCATGCATAATGTATCATTAGATAGTAACTGTCTTCAGAGTGCGACAAATCAGAAGTCAACGGTGGAATGTGCGTCGTTTTATGCGGATAGGGGCCTCCGTTTTGATAATTTTGGACAACCGAATACGACAAAACCTGTAGAAGGTTCTGGGAAAAGTAATAAAACTAAGATAATATTGGCGGCAGTTTTGGGTGGACTTGGTTTACTTGCACTTTTGGCTTTGCTACTGGTACTGTTGCTTTTGTGCACTCGTAAAAGGGGTAATTCAAGTCAAAGGGGTAATGGCGTGGGCCCTGCTCCTGCCGCAGGAAGTCCTCCGCCTCCTGGTGTATCGATAAACCTTGCAAATGTAGGAGACTCGTTTACGTATCATCAGTTGCTTCAGGCAACGGGAGATTTCAACGATGGAAATCTTATAAAACAAGGCCACACCGGGGATTTCTTCAACGGTGTTTTGGAAAATGGGATTCCCGTTGTCATCAAAAGGATTGACACGCGATCTATGAAAAAGGATGCTTACCTATCGGAATTGGACTTTTTTAATAAGGTTTCTCATCCGAGATTTGTTCCCTTATTAGGTCACTGCTTAGAAAACGAAAACGAGAAGTTCCTGGTTTATAAACTTATGCCAAAAGGGGACTTGTCTAACTGCTTATTCTTCAAAAATACCACATCTGAAGATGGTACTTTGCAGTCATTGGACTGGATAACTAGGTTAAAGATTGCTACTGGAGCAGCAGAGGCCATATCGTATCTGCATCATGACTGTATTCCACCTATTGTTCACAGAGATATTCAAGCGAGCAGTATACTTCTTGATGACAAGTATGAAGTTCGGTTAGGAAGTCTAAGTGAAGCCTGTACTCAAGAAGGTGATACACATCAAAGTAAAATCACCCGGTTTCTGCGATTGCCTCAGTCCTCTGAACAAGGTGCATCTGGTTTGCCAACATCTGTTTGTACCTATGATGTTTATTGCTTTGGGAAAGTGTTACTTGAACTTGTGACTGGTAAGCTGGGCATTAGTGCATCAAGTGAGGGTGAATTGAAGGATTGGTTTGATCAGATTCTACCTTGCATTAGCATGTATGACAAGGAGCCCGTGACGAAAATCGTTGACCCGTCTCTTGTTGTGGACGAGGATTTCTTAGAGGAAGTGTGGGCAATATCCATTGTTGCCAGGTCTTGCCTAAACCCAAAACCTTCAAGACGACCCCCAATGAGATACGTTCTCAAGGCTTTGGAAAACCCTTTAAAAGTTGTAAGAGAAGAAAGTTCGAGTTCTGCGCGGCTTAAAGCAACCTCTTCTAGAGGCTCTTGGAATGCTACTTTGTTTGGTAGTTGGCGTCAGAGCTCGTCTGATGTAACCACAATCCCTGCAGCTTCTGGTACAAAACTAGAAGGAGCTAGTAGTTTGAAGCTTTCAGCAACAAGTAGTTCATCCTCGCGGAGGCGGCATTCAAATGAGATATGTCCTGAGCCATCATTTCGCTTACCTGATATAGAGAGGATGGAGCACGAAGGAGGAAGAGAGGCTTAA 2619 0.4234 MVDRRFILWFVLLLLFLCFEVTLEQIEIQPLSSPQERAALLQLRASLGLRTKEWPRKPDPCLIWTGISCRNGRVVGINISGFRRTRIGRINPQFSVDALVNFTLLQSFNASGFYLPGSIPDLFGFSLGTLRVLDLRSCSIGNAIPNSIGNLTRLTALYLSDNNLTGNVPDSLGQLSSLSVLDLSGNSLTGIIPESFGFLANLSSLDLSGNFFSGPVLSGLGNLSRLQYLNLSGNSLNSLPAQLGGLVSLVDLDLSENSFSGSILPDLKGLGNLQIIVVRRNNFTGSLPVELWSLPRLTFVDVSSNSFSGLLPNSSSSVDSTVAVLNISHNMFYGGLKPVLRRFSYVDLANNYYEGRVLDFMHNVSLDSNCLQSATNQKSTVECASFYADRGLRFDNFGQPNTTKPVEGSGKSNKTKIILAAVLGGLGLLALLALLLVLLLLCTRKRGNSSQRGNGVGPAPAAGSPPPPGVSINLANVGDSFTYHQLLQATGDFNDGNLIKQGHTGDFFNGVLENGIPVVIKRIDTRSMKKDAYLSELDFFNKVSHPRFVPLLGHCLENENEKFLVYKLMPKGDLSNCLFFKNTTSEDGTLQSLDWITRLKIATGAAEAISYLHHDCIPPIVHRDIQASSILLDDKYEVRLGSLSEACTQEGDTHQSKITRFLRLPQSSEQGASGLPTSVCTYDVYCFGKVLLELVTGKLGISASSEGELKDWFDQILPCISMYDKEPVTKIVDPSLVVDEDFLEEVWAISIVARSCLNPKPSRRPPMRYVLKALENPLKVVREESSSSARLKATSSRGSWNATLFGSWRQSSSDVTTIPAASGTKLEGASSLKLSATSSSSSRRRHSNEICPEPSFRLPDIERMEHEGGREA* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0164 872 SMART LRR_typ_2 223 246 IPR003591 -
Psa5g0164 872 SMART LRR_typ_2 151 174 IPR003591 -
Psa5g0164 872 SMART LRR_typ_2 175 198 IPR003591 -
Psa5g0164 872 SMART LRR_typ_2 294 317 IPR003591 -
Psa5g0164 872 Pfam Protein tyrosine and serine/threonine kinase 498 719 IPR001245 GO:0004672|GO:0006468
Psa5g0164 872 ProSiteProfiles Protein kinase domain profile. 493 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g0164 872 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Psa5g0164 872 Gene3D Ribonuclease Inhibitor 193 384 IPR032675 -
Psa5g0164 872 Gene3D Transferase(Phosphotransferase) domain 1 569 797 - -
Psa5g0164 872 ProSiteProfiles Leucine-rich repeat profile. 225 247 IPR001611 GO:0005515
Psa5g0164 872 Pfam Leucine rich repeat 154 210 IPR001611 GO:0005515
Psa5g0164 872 MobiDBLite consensus disorder prediction 826 872 - -
Psa5g0164 872 Gene3D Phosphorylase Kinase; domain 1 471 567 - -
Psa5g0164 872 PRINTS Leucine-rich repeat signature 178 191 - -
Psa5g0164 872 PRINTS Leucine-rich repeat signature 223 236 - -
Psa5g0164 872 PANTHER RECEPTOR-LIKE PROTEIN 55 8 190 - -
Psa5g0164 872 PANTHER RECEPTOR-LIKE PROTEIN 55 168 823 - -
Psa5g0164 872 SUPERFAMILY L domain-like 63 339 - -
Psa5g0164 872 SUPERFAMILY Protein kinase-like (PK-like) 473 774 IPR011009 -
Psa5g0164 872 MobiDBLite consensus disorder prediction 846 872 - -
Psa5g0164 872 PANTHER BNAA07G03560D PROTEIN 8 190 - -
Psa5g0164 872 PANTHER BNAA07G03560D PROTEIN 168 823 - -
Psa5g0164 872 MobiDBLite consensus disorder prediction 826 845 - -
Psa5g0164 872 Pfam Leucine Rich Repeat 130 151 IPR001611 GO:0005515
Psa5g0164 872 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0164 Psa-Chr5 10542543 10547734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0164 29 666 Miscellaneous Gene Families AT2G16250 54.167 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Psa5g0164 PK_Tyr_Ser-Thr 2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0164 - - gmx:100805769 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0164 5 10542543 10547734 Psa5g0164 5 10542543 10547734 ECH