Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0161 ATGGCCGAATCTGAGTACAAATGCTTTGTTGATGGACTTGTTTGGGCCACTGACGACTATTCTCTTGGCAAAGCATTTTCTTCCTTTGGCGAAATCATCGATACGAAGGTCATCGTTGATCGTGAAACTGGAAGATCGAGCGGATCTGGAATCATCACATTTGCATCGGAGCAGTCAATGAAAGACGCCATTAAAGCGATGCACGGCCAGGAGCTACATGGCAGTAAAATCACTGTGAGTGAGACTCAAAACCACGGTAGTGGTGATGGTTCAAAAGGAGACTAG 285 0.4596 MAESEYKCFVDGLVWATDDYSLGKAFSSFGEIIDTKVIVDRETGRSSGSGIITFASEQSMKDAIKAMHGQELHGSKITVSETQNHGSGDGSKGD* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0161 94 PANTHER GEO13361P1-RELATED 2 93 - -
Psa5g0161 94 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Psa5g0161 94 SUPERFAMILY RNA-binding domain, RBD 4 85 IPR035979 GO:0003676
Psa5g0161 94 MobiDBLite consensus disorder prediction 75 94 - -
Psa5g0161 94 SMART rrm1_1 7 80 IPR000504 GO:0003723
Psa5g0161 94 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Psa5g0161 94 Gene3D - 1 94 IPR012677 -
Psa5g0161 94 MobiDBLite consensus disorder prediction 74 94 - -
Psa5g0161 94 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 2 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0161 Psa-Chr5 9977697 9978426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0161 9 65 C2H2 Transcription Factor Family AT2G19380 38.596 6.26e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0161 - K13195 gmx:547560 125.561