Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa5g0160 | ATGGCCGAGTTTGAGTACAAATGTTTTGTTGGTGGACTTGCTTGGGCCACTGACGGCTATGCTCTTGGTAAAGCATTTTTTTCCTTTGGCGAAATCATCGAAATGAAGGTCATCATTGATCATGAAAGTGGAAGATCGAGCGAATATGGAATCGTCACATTTGCGTCGGAGCAGTCAATGAAAGATGCCATTAAAACGATGCACAACTAG | 210 | 0.4286 | MAEFEYKCFVGGLAWATDGYALGKAFFSFGEIIEMKVIIDHESGRSSEYGIVTFASEQSMKDAIKTMHN* | 70 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa5g0160 | 69 | Gene3D | - | 1 | 69 | IPR012677 | - | |
| Psa5g0160 | 69 | PANTHER | GEO13361P1-RELATED | 2 | 68 | - | - | |
| Psa5g0160 | 69 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 68 | IPR000504 | GO:0003723 | |
| Psa5g0160 | 69 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 69 | IPR035979 | GO:0003676 | |
| Psa5g0160 | 69 | PANTHER | RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED | 2 | 68 | - | - | |
| Psa5g0160 | 69 | SMART | rrm1_1 | 7 | 69 | IPR000504 | GO:0003723 | |
| Psa5g0160 | 69 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 69 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa5g0160 | Psa-Chr5 | 9942982 | 9943605 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa5g0160 | 9 | 65 | C2H2 Transcription Factor Family | AT2G19380 | 40.351 | 2.79e-09 | 49.3 |