Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0159 ATGGCTGAATCTAAGTACAAATGCTTTATTGATGGACTTGCTCAGGACACTGACGGCTATGCTCTTGTTGAAGTATTTTCTTCCTTTGACAAAATCATCGAAACAAAGGTCATCGTTGATAATGAAATTGGAAGATCGAGCAAATCTGGAATCGTCACATTTGCATCGGAGCAGGCAATGAAAGAAGCCATTAAAACGATGCACGGTCAGGAGCTAGATGGCAATAAAATCACTGTGAGCGAGATTCAAAGCCACGACAGTGGTGTTGATAAAAATTGA 279 0.405 MAESKYKCFIDGLAQDTDGYALVEVFSSFDKIIETKVIVDNEIGRSSKSGIVTFASEQAMKEAIKTMHGQELDGNKITVSEIQSHDSGVDKN* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0159 92 Gene3D - 1 84 IPR012677 -
Psa5g0159 92 SMART rrm1_1 7 80 IPR000504 GO:0003723
Psa5g0159 92 PANTHER GEO13361P1-RELATED 2 88 - -
Psa5g0159 92 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Psa5g0159 92 SUPERFAMILY RNA-binding domain, RBD 4 84 IPR035979 GO:0003676
Psa5g0159 92 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Psa5g0159 92 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 2 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0159 Psa-Chr5 9941051 9942073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0159 9 91 Eukaryotic Initiation Factors Gene Family AT4G34110 34.884 1.63e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0159 - - gmx:547560 97.4413