Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0120 ATGACCATGGCTAAACCAAAAGCTCCGAGACGAACCCTAGAGTCATACTCAGTCAAACACATGAACAAACCTATTAAAGCTGGAGATTGTGTGCTTATGCGTCCATCTGAACCGTCGAAACCGTCCTATGTGGCTAGGATTGAAGGGATCGAAGCTGATTCACGAGGTGCTAATGTGAAAATTCATGTTCGTTGGTATTATCGACCTGAGGAGTCTCTTGGTGGCCGGCGGCAGTTTCATGGTTCTAAAGAGGTTTTTCTCTCGGATCACTTTGATGTTCAGAGTACTGATACAATTGAAGCAAAGTGTATTGTTCACAGTTTTAAGAGCTACACTAAGCTTGATGCTGTTGGTAATGATGATTTCTTCTGCCGCTTTGAGTACAATTCCTCTACCGGTGCTTTCAATCCTGATAGAGTTGCAGTATATTGTAAATGTGAGATGCCATACAACCCGGATGATCTTATGGTCCAGTGTGAGGGCTGCAGTGATTGGTTTCATCCGGCTTGTATAGACATGACTGTAGAGGAAGCCCAGAGACTCGACCACTTCTTTTGTGAAGGTTGTTCGGTCGAAGGTCAGAAACAGTTGCAAAATGCTCATTCTGCCACAAGACCCTCGGATACAAAGGTGGATACTAAACGGCGTCGAAGGTAA 657 0.446 MTMAKPKAPRRTLESYSVKHMNKPIKAGDCVLMRPSEPSKPSYVARIEGIEADSRGANVKIHVRWYYRPEESLGGRRQFHGSKEVFLSDHFDVQSTDTIEAKCIVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAQRLDHFFCEGCSVEGQKQLQNAHSATRPSDTKVDTKRRRR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0120 218 ProSiteProfiles Zinc finger PHD-type profile. 141 192 IPR019787 -
Psa5g0120 218 ProSitePatterns Zinc finger PHD-type signature. 144 189 IPR019786 -
Psa5g0120 218 ProSiteProfiles BAH domain profile. 23 139 IPR001025 GO:0003682
Psa5g0120 218 MobiDBLite consensus disorder prediction 197 218 - -
Psa5g0120 218 Pfam BAH domain 26 138 IPR001025 GO:0003682
Psa5g0120 218 Gene3D - 2 137 IPR043151 -
Psa5g0120 218 Pfam PHD-finger 143 191 IPR019787 -
Psa5g0120 218 SUPERFAMILY FYVE/PHD zinc finger 132 196 IPR011011 -
Psa5g0120 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 205 IPR013083 -
Psa5g0120 218 PANTHER OS08G0421900 PROTEIN 3 218 - -
Psa5g0120 218 SMART BAH_4 23 139 IPR001025 GO:0003682
Psa5g0120 218 PANTHER CHROMATIN REMODELING PROTEIN SHL 3 218 IPR045205 GO:0006325|GO:0035064
Psa5g0120 218 SMART PHD_3 143 190 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0120 Psa-Chr5 7123643 7127525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0120 33 141 Core DNA Replication Machinery Family AT4G14700 30.275 3.12e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g0120 BAH 3.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0120 - - gmx:100787968 426.402