Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0113 ATGGAGTTTGCGGTGGCAAAAGCTTTGAAACCGAGTTTGAGGAGGGAGTTTGTTTTTCAACAAACGCTTGGTGAAGAACTGTTTAGCTTTAACTCGAACACGGTGGTTGCCGGTGAAGATTTCTCGGTGGACGACCTCCTTGACTTCTCCAACGGCGATGAACAACACCACGAGGGAGATGAAGAAGAAAAAGATAGTTTATCTCTTTCCTCTCACTCGCTCTCGGAAGATAGCAACTCCAATTCCACCGACGCTTCCTATGATTCCATTTTCTCAACTGAATTACTCGTTCCGGATGATGACGTGGCAGGCCTTGAATGGGTTTCTCATTTTGTAGATGATTCTTTACCAGAGCTTCCTCTTCTCTACCCGGTTCAACTTCAAACCAACGCGTATCCTCAAAATGAACCGAACCATGAAAAACCTTTTCGTTTTTCTTCTGATAAAATTACCAGAAAAACCAGAACCGTCAAGAGCAGAAAACCAAACCCTCGGGCTTGGGCTTTTAGCCCTTTGATTTTGCGTCCGTTTTTTCCGTCTACGGTCTTTGCAGAGCCGCCAGCGAAGAAACAGAAGAAAAAGGCCCAGGCCCAGGCCCAAGTTGATGGAGTTGAAGCCCAAGATGAGGGCCATTTACAGCGACGGTGTAGTCATTGCCAAGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGTTAGGAGCTAAAACCCTATGTAACGCGTGTGGGGTTCGGTATAAATCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACTTTCAGTAGTGAAATTCACTCCAATAGCCACCGCAAAGTGTTGGAGATGAGGAAGAGGAAAGGGATGGTTGGACCGGAATCCGGTTTATCGGCTCAGACCCAAATAGTTACAACTTGCTGA 903 0.474 MEFAVAKALKPSLRREFVFQQTLGEELFSFNSNTVVAGEDFSVDDLLDFSNGDEQHHEGDEEEKDSLSLSSHSLSEDSNSNSTDASYDSIFSTELLVPDDDVAGLEWVSHFVDDSLPELPLLYPVQLQTNAYPQNEPNHEKPFRFSSDKITRKTRTVKSRKPNPRAWAFSPLILRPFFPSTVFAEPPAKKQKKKAQAQAQVDGVEAQDEGHLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPESGLSAQTQIVTTC* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0113 300 ProSiteProfiles GATA-type zinc finger domain profile. 214 246 IPR000679 GO:0006355|GO:0043565
Psa5g0113 300 PIRSF Txn_fac_GATA_plant 22 299 IPR016679 GO:0003677|GO:0005634|GO:0045893
Psa5g0113 300 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Psa5g0113 300 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Psa5g0113 300 PANTHER GATA TRANSCRIPTION FACTOR 1 300 - -
Psa5g0113 300 SMART GATA_3 210 264 IPR000679 GO:0006355|GO:0043565
Psa5g0113 300 MobiDBLite consensus disorder prediction 53 83 - -
Psa5g0113 300 PANTHER GATA TRANSCRIPTION FACTOR 1 300 - -
Psa5g0113 300 MobiDBLite consensus disorder prediction 53 70 - -
Psa5g0113 300 Gene3D - 207 282 IPR013088 GO:0006355|GO:0008270
Psa5g0113 300 CDD ZnF_GATA 215 272 IPR000679 GO:0006355|GO:0043565
Psa5g0113 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0113 Psa-Chr5 5884218 5886265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0113 38 297 C2C2-Gata Transcription Factor Family AT3G51080 42.105 2.02e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa5g0113 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0113 - - gmx:100808242 337.421