Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0103 ATGGAAGAAGATGTTTGTTTCATTTGCTTTGATGGAGGTGACCTTGTGCTCTGTGATCGCAGGGGTTGTCCCAAGGCTTACCACCCTTCCTGCATTAATCGGGACGAAGCTTTCTTCCGAGCCAAGGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAGTCCACACTACTTCTGTTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCTGTTATGTTATGTGTTAGGGGAAACAAGGGATTTTGCGAGACATGCATGAAAACTGTAATGTTGATTGAACAGAATGAGGAGGGAAACACCACGGGACAAGTTGATTTTGATGACAAAAGTAGCTGGGAATATCTTTTCAAGGATTACTATGTAGATCTAAAAGAAAAGCTGTCTCTTACATTTGATGAACTTGCTCAAGCTAAAAACCCTTGGAAGGGATCTGGTAAACTTCCTTCTAAAGATGAATCACAGGATGAACTTTTTGATGCTACCAATGATAAAGGGTCAGATTCAGATAGCTCTTATGAGAATGTAGATTTGGGTCGATCTAAGAAAAGAAAGTCCAAGAGACGTGCAAAGTCTCGTTCCAAACGCGGCGCTGATGGGCTATCTACAGAAGAAAGCACTGAGTGGGCTTCAAAGGAGCTCTTGGAGTTTGTTATGCACATGAGAAATGGAGATAAATCTATGTTGTCACAATTTGATGTGCATGCTCTTTTGCTAGAATATATTAAAATAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTGTTTGTGATGCGAGGCTTCAAGATTTGTTTGGTAAGCCAAGAGTTGGGCATTTTGAAATGTTAAAACTTCTTGAATCCCATTTCTTTCTGAAAGAGGATTCACAGCCTGAAGATCACCAGGGAAGTGTTGTTGATACTGAGGTTAGTCATTTGGAGGGTGATGGCAATGGTGACACATATACTAAAGCTGGAAAAGATAAGAAACGTAAAAGTCGTAAAAAGGGTGATGGGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATTTAAGACGCAATTTAGTGGAGGATTTACTTGAAGATATAGATAAGTTTCATGATAACGCCGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGCAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAACAGCAGAGCCATATAAAGTTGGTAAAAAGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAAATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGCCTCCGTCAAAGCATAAAATGCGGCCTCATTAATCGGATGACTGTGGGTGACATTCAGGAGAAATCATTGACACTTCAGGCAGTTAGAGTAAAAGATTGGCTGGAAGCAGAGATAGTACGGCTAAGTCACCTTCGTGATAGAGCTAGCGAGAAAGGACGCAGAAAAGAGCTTAGAGAATGCGTAGAGAAATTGCAGCTTTTGAAAACCCCTGAAGAACGACAACGTAGATTGGAGGAAATTCCGGATATACATGTTGATCCAAAGATGGATCCAAGTTATGAGTCTGACGAAGGAGATGAAATGGAGGATAAACGACAAGAAAGCTTCACGAGACCTAGAGGGTCGACTGCGTTTGGAAGGAAGGGGAGAGAAATTGCTTCGCCTAGAAGTGGTTCCATTTCAAGTGATTCTTGGAGTGGAACAAGAAATTATTCTCATGTGAATCAGGAACTCAGCAGAAATTTGTCTAATAAGGGATTTCCAGTCAAAGGTGATGATTTTTCCAATGCTAGTGAGGCTTTAAATGATGCTCAATTGCATCAGGGAAGAGATAGGGAATCACAACTATCTAATAGTCGAGAGAGGCAAAAGCCGCGGTCTTCAAGCTGGGAGAGTGGTGCTAAAAATATCCAGCCATTGGTAACCACCGAGTCTTTTTCTAATGCGGTGTCAGAAGCTGCCGCAGCACCATCTTCTGCCGGAGTAGCAGCCCCAGATGTGAAAATTAATGAAACTGAAAAGATGTGGCGTTATCAGGATCCATCTGGTAAAGTTCAGGGGCCATTTTCCATGGTGCAACTTCGCAAATGGAATAATACCGGATACTTCCCTACTGATTTGAGGATTTGGAAAGCCACCGAGAAACAAGAGGAGTCTATACTCTTAGCTGATGTCTTAGCTGGGAAAATTTCAAAAGAACCTTCCATTGTGGAAAAAACTCCTCCTAAGGCTCAAAACCACTCATCCTCGCTCTCTAGGATGTCTCCTATGGCTGCCCAAGGTTTAACAGGTAAAACTTCTCCATTGGCAGTTGAGGTCCCTAAGAATCTTGGAAATGGTTGGGGTTCTGATATCGGTGCTAGAAATGAATCAACAAATCTTCCTTCGCCTACTCCCCAAACTGCTTCAGGTGGGTCGAAGGAGCATACTTTTGAAAATTGGTCACCAACACCTGTCCAGATGGCTGGGCCTGTCTTGGGAAATTCGTTCCCTAGCGGTATCAGAGGTTTGCAGGCCTCTGTGGCAGTAAACGCACAACCTGGTATGGCTACTGATACTACTCAAGTACACCTCCAAGCAACAGAAATGGCACAGGCTCTGGCTGCATCAAATATGCAAAACCAGATTAGTCATAATTCTCGTGCTGAAGCTCAAGCGTGGGGTCAAAATGTGCTTCCAAAGCAAGAATCACAGGTCTGGGTAGGCACTCCATCCCAAAAGGTAGAACCAAATAATTCTGCCACCATGCCTGCCCAACCGACTTCCCATGGTCTATGGGGTGATGCTTCCTCTGTTCAGAACTCTGTCTCATCTAACATGGGAAATCAAATTGGGAGCTTACCCACACATGGTTTTCCAGGCATGAGTGCACCCGAGCCTTGGAGACCACCAGTTGCAGGTAATCAAGCAAATGTCATGGCCCCACCACCACCCAATGTACCCTGGGGCATGAACATGCCAGGAAATCATAATATTAACTGGGGTGGTGCTATACCTGCCAATATGAATGTCAACTGGATGCCTGCACAAGGGCCAGCACCAGGAAATTCACTTCCAGGATGGGTAGCTCCTACCCAGGGGCCACCTCCGGTAAATGCAAATGCAGGTAGTTGGGTAGCACCTGGTCAAGGTCATCAGCATGTAAATGCAAATGCAAATGCAGGTTGGGCTGTGCCTGGTCAAGGGCCAGCACCTAGAAGTGCCAATCCTGCTTGGGCTGCATCTGCTGGGAACCCAGGCATGCGAGGAAACGAGCAAAGTCATAATGGAGATAGGTTTCCCAATCAAGGGGAACGTGGCACGCGTGGTGGAGATTCTGGTCGTGGTGGTAAACCTTGGAACAGACAGTCATCATTTAGAGGCGGAAGCGGAGGAAGAGGAGGGGGTTCTTCTAGGCCTCCCGGCGGAGGACAAAGAGGAATCTGCAGGTTTCATGAGGGTGGACATTGCAGGAGAGGAGCTACCTGTGATTATCAACACATTTAA 3570 0.4426 MEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFRAKGKWNCGWHLCSNCEKSPHYFCYTCTFSLCKGCIKDAVMLCVRGNKGFCETCMKTVMLIEQNEEGNTTGQVDFDDKSSWEYLFKDYYVDLKEKLSLTFDELAQAKNPWKGSGKLPSKDESQDELFDATNDKGSDSDSSYENVDLGRSKKRKSKRRAKSRSKRGADGLSTEESTEWASKELLEFVMHMRNGDKSMLSQFDVHALLLEYIKINKLRDPRRKSQIVCDARLQDLFGKPRVGHFEMLKLLESHFFLKEDSQPEDHQGSVVDTEVSHLEGDGNGDTYTKAGKDKKRKSRKKGDGRGLQSNVDDYAAIDNHNINLIYLRRNLVEDLLEDIDKFHDNAVGSFVRIRISGSGQKQDLYRLVQVVGTCKTAEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQEKSLTLQAVRVKDWLEAEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPDIHVDPKMDPSYESDEGDEMEDKRQESFTRPRGSTAFGRKGREIASPRSGSISSDSWSGTRNYSHVNQELSRNLSNKGFPVKGDDFSNASEALNDAQLHQGRDRESQLSNSRERQKPRSSSWESGAKNIQPLVTTESFSNAVSEAAAAPSSAGVAAPDVKINETEKMWRYQDPSGKVQGPFSMVQLRKWNNTGYFPTDLRIWKATEKQEESILLADVLAGKISKEPSIVEKTPPKAQNHSSSLSRMSPMAAQGLTGKTSPLAVEVPKNLGNGWGSDIGARNESTNLPSPTPQTASGGSKEHTFENWSPTPVQMAGPVLGNSFPSGIRGLQASVAVNAQPGMATDTTQVHLQATEMAQALAASNMQNQISHNSRAEAQAWGQNVLPKQESQVWVGTPSQKVEPNNSATMPAQPTSHGLWGDASSVQNSVSSNMGNQIGSLPTHGFPGMSAPEPWRPPVAGNQANVMAPPPPNVPWGMNMPGNHNINWGGAIPANMNVNWMPAQGPAPGNSLPGWVAPTQGPPPVNANAGSWVAPGQGHQHVNANANAGWAVPGQGPAPRSANPAWAASAGNPGMRGNEQSHNGDRFPNQGERGTRGGDSGRGGKPWNRQSSFRGGSGGRGGGSSRPPGGGQRGICRFHEGGHCRRGATCDYQHI* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0103 1189 ProSiteProfiles Zinc finger C3H1-type profile. 1164 1189 IPR000571 GO:0046872
Psa5g0103 1189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 97 IPR013083 -
Psa5g0103 1189 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 1 1188 - -
Psa5g0103 1189 MobiDBLite consensus disorder prediction 527 596 - -
Psa5g0103 1189 Gene3D SWIB/MDM2 domain 206 301 IPR036885 -
Psa5g0103 1189 MobiDBLite consensus disorder prediction 297 342 - -
Psa5g0103 1189 Gene3D - 702 759 IPR035445 -
Psa5g0103 1189 SMART gyf_5 702 757 IPR003169 GO:0005515
Psa5g0103 1189 CDD GYF 701 756 IPR003169 GO:0005515
Psa5g0103 1189 SMART swib_2 225 296 IPR019835 -
Psa5g0103 1189 MobiDBLite consensus disorder prediction 156 171 - -
Psa5g0103 1189 CDD SWIB-MDM2_like 216 291 - -
Psa5g0103 1189 MobiDBLite consensus disorder prediction 633 656 - -
Psa5g0103 1189 SUPERFAMILY FYVE/PHD zinc finger 2 56 IPR011011 -
Psa5g0103 1189 MobiDBLite consensus disorder prediction 150 211 - -
Psa5g0103 1189 Pfam GYF domain 704 744 IPR003169 GO:0005515
Psa5g0103 1189 ProSiteProfiles SWIB/MDM2 domain profile. 210 293 IPR003121 -
Psa5g0103 1189 SUPERFAMILY SWIB/MDM2 domain 214 292 IPR036885 -
Psa5g0103 1189 Pfam SWIB/MDM2 domain 218 291 IPR003121 -
Psa5g0103 1189 PANTHER UNCHARACTERIZED 1 1188 - -
Psa5g0103 1189 ProSiteProfiles Plus3 domain profile. 352 485 IPR004343 GO:0003677
Psa5g0103 1189 SMART rtf1 352 462 IPR004343 GO:0003677
Psa5g0103 1189 MobiDBLite consensus disorder prediction 1109 1167 - -
Psa5g0103 1189 ProSiteProfiles Zinc finger PHD-type profile. 3 69 IPR019787 -
Psa5g0103 1189 SUPERFAMILY Plus3-like 353 481 IPR036128 GO:0003677
Psa5g0103 1189 Pfam Plus-3 domain 357 460 IPR004343 GO:0003677
Psa5g0103 1189 ProSiteProfiles GYF domain profile. 701 755 IPR003169 GO:0005515
Psa5g0103 1189 SMART PHD_3 5 51 IPR001965 -
Psa5g0103 1189 CDD PHD5_NSD 5 50 - -
Psa5g0103 1189 Gene3D - 354 482 IPR036128 GO:0003677
Psa5g0103 1189 MobiDBLite consensus disorder prediction 632 664 - -
Psa5g0103 1189 SUPERFAMILY GYF domain 696 754 IPR035445 -
Psa5g0103 1189 MobiDBLite consensus disorder prediction 527 565 - -
Psa5g0103 1189 ProSitePatterns Zinc finger PHD-type signature. 6 66 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0103 Psa-Chr5 5735343 5744038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0103 3 83 PHD Transcription Factor Family AT5G36670 33.333 2.81e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Psa5g0103 Plus-3 6.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0103 - - mtr:MTR_3g117490 1895.17