Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0099 ATGAAGATTCAATGTGATGTTTGTGAGAAAGCTGAGGCTTCCATGTTTTGTCCTTCAGATGAAGCTGCTCTTTGCCATGGATGTGATTTTACTATCCACCATGCTAACAAACTTGCTACCAAACATACTCGTTTCTCTCTTGTTCATCTCAACTCCAAAGACTACCCTCTTTGTGATATCTGTCAAGAGAGGCGCGGATATCTATTTTGCCAAGAAGATAGAGCGATTCTATGCAGAGAATGTGAAGTTCCAATCCATAGTGCAAATGAACATACACAGAAACACAACAGGTTTCTTCTATCTGGTGTGAAGCTTTCAAGCAATTCTTTGGACACATATTCATCATCCACCACCAGTAATGGCTCTCGGCATTCGAAACCAAACATAATACCAAGATCAGTTTCCAATGAAAATGCGAGTTCTTCTAGCAAGTTTGAAGACAACATGGCTAGTGACACTGGTTCAGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGAAACACTACCTGGTTACTGTTTTGAAGATTTTCTTGATGCTTCATTCCCACCAAATGGTTTCTAA 564 0.3972 MKIQCDVCEKAEASMFCPSDEAALCHGCDFTIHHANKLATKHTRFSLVHLNSKDYPLCDICQERRGYLFCQEDRAILCRECEVPIHSANEHTQKHNRFLLSGVKLSSNSLDTYSSSTTSNGSRHSKPNIIPRSVSNENASSSSKFEDNMASDTGSVSTSSISEYLIETLPGYCFEDFLDASFPPNGF* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0099 187 MobiDBLite consensus disorder prediction 114 152 - -
Psa5g0099 187 Gene3D Classic Zinc Finger 1 100 - -
Psa5g0099 187 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Psa5g0099 187 SMART bboxneu5 4 47 IPR000315 GO:0008270
Psa5g0099 187 SMART bboxneu5 53 100 IPR000315 GO:0008270
Psa5g0099 187 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Psa5g0099 187 CDD Bbox1_BBX-like 57 100 - -
Psa5g0099 187 CDD Bbox1_BBX-like 5 47 - -
Psa5g0099 187 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 - -
Psa5g0099 187 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 187 - -
Psa5g0099 187 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0099 Psa-Chr5 5380227 5382143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0099 1 187 C2C2-CO-like Transcription Factor Family AT1G75540 51.220 1.27e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Psa5g0099 zf-B_box 6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0099 - - mtr:MTR_3g117320 313.538