Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0093 ATGAACGTCAACGGCGGCGAGGAAGATTCTCGCCACGGAGGTTCGGCGGTAACTCTTCAAACCACCGATCAACTCATCGCCAGGTGCATAGCTCCTGTCAAAAACGAATTCCTTCGTCCTCCTCCAGACCGAACTTCCTCCCAAAACGACGACGTTTCAATCCCAAAGGACAAAGCCCCCGTTCTCGCCAAGGAGAAGAAATCCAAACGCCAACTCAAACGCGAACGTCGTCAGGATCAAAAATCAACGAAAAATCTGTGTCCAGAGATTTCCAAGTCCGGTGATGTTAATTCATGTCGTTATCAAGATAAGTGTCGTTTCAGCCACGATATAGAAGCTTTTAAGGAACAGAAACCGGCTGATTTGGAAGGAGAATGTCCTTTTTTGAAATCTGAAGGGTCTTGTCCTTATGGCCTATCGTGTAGATTTTTAGGTACTCATGAAGAGGGTAAGCCTTTATCTTCTAATGGATTGGAGAGAAGGTCTGAAGTTAATGGTTTTAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGACTTTCCCCAAAGCTGATGCAAAACTCAAAAGTCTTGGCCTATTGTCTAAGTCAAAAGGGAATGCCTTGGAAAACAAAGATGGCGGTGACAAATGTGTTCAGTCTGATGACATTGGTTCTTGTGCGGTTACATCTGAGTTGGAAAACAAAGATGGTGTTGACAAATGCCATCAGTCTGATGACGATGATTCTTTTGGGGTGATTGTTGACTCAGATTCTAAGTTAGAATGCTCTGTAGAGGTTCTAAAAGATGACGATGGCGTCAATAGAGAACTTGAATCTGATGTACTTTGTCCCCTGAAGAGAAGAAAAACTGCGGAAGATTGTGCTGGTGAGGAGACAAAAACTGAAGGTGTGAGTGTTGCTGGTCAAAATGTTGACGGAAGCTGCATAAGATCTGAGCCAGAGGCAGGAACTGAAGCTATAACCCCAGAAACTGATATAAGTTTGAAATCACACTTGCGTGAGAAGAAGCTTATTGATTTCAGGGATAAGTTGTATCTTGCCCCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGCCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGCGCATATCCAGATTCTGTGGCGCGAACAGTTGAACTAATAGAAAAGGAATGTTCAGTAGATTTCATTGATATAAATATGGGCTGCCCTATTGACATTGTTGTGAACAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGAAAAGTGTTGTAGAAGTAGCTTCAGGCACAGTTGATATACCAATAACTATCAAGGTACGGACAGCTTATTTTGAAGGAAAGAACCGTATCGACTCAGTGATAGCAGACTTTAGCTCCTGGGGAGCTAGTGCAGTAACAATACACGGTAGGTCACGGCAACAACGCTACAGTAAGCTTCCTGACTGGGATTACGTATATCAATGTACAAAGAAAGCCCCTAAAAATTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTTGAAGACTGGAACAATCACAAAACTGAATGCCCTGAGCTTGCTACATGCATGATTGCCCGTGGTGCACTGATTAAACCTTGGATATTTACAGAGATAAAGGAGCAGCGACATTGGGACATTAGTTCCGGCGAGCGGTTAAATATTTTCAAAGATTTTGTGCATTTTGGTCTTCAACATTGGGGTTCAGATACCAAAGGAGTGGAGACAACCAGACGGTTCTTGTTGGAATGGCTTAGCTACACCTGTAGGTACATACCTGTTGGTCTTATGGAAGTTGTTCCACAACGAATAAATTGGCGTCCACCATCTTATTACGGGCGTGATGACCTTGAGACACTGATGGCCTCAGACTCCGCAGCTGACTGGGTGCGATTATCAGAGATGTTACTTGGCAAAGTTCCAGACGGATTTGCTTTTGCCCCGAAGCATAAATCAAATGCTTACGACAGAGCTGAAAATGGTTAA 2094 0.4322 MNVNGGEEDSRHGGSAVTLQTTDQLIARCIAPVKNEFLRPPPDRTSSQNDDVSIPKDKAPVLAKEKKSKRQLKRERRQDQKSTKNLCPEISKSGDVNSCRYQDKCRFSHDIEAFKEQKPADLEGECPFLKSEGSCPYGLSCRFLGTHEEGKPLSSNGLERRSEVNGFSKDVQKLLWKNKMTFPKADAKLKSLGLLSKSKGNALENKDGGDKCVQSDDIGSCAVTSELENKDGVDKCHQSDDDDSFGVIVDSDSKLECSVEVLKDDDGVNRELESDVLCPLKRRKTAEDCAGEETKTEGVSVAGQNVDGSCIRSEPEAGTEAITPETDISLKSHLREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDSVARTVELIEKECSVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSVVEVASGTVDIPITIKVRTAYFEGKNRIDSVIADFSSWGASAVTIHGRSRQQRYSKLPDWDYVYQCTKKAPKNLQVVGNGDVFSFEDWNNHKTECPELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLMEVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMLLGKVPDGFAFAPKHKSNAYDRAENG* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0093 697 ProSiteProfiles Zinc finger C3H1-type profile. 125 150 IPR000571 GO:0046872
Psa5g0093 697 ProSitePatterns Uncharacterized protein family UPF0034 signature. 429 447 IPR018517 GO:0008033|GO:0017150|GO:0050660
Psa5g0093 697 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 31 697 - -
Psa5g0093 697 SMART c3hfinal6 82 111 IPR000571 GO:0046872
Psa5g0093 697 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Psa5g0093 697 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 31 697 - -
Psa5g0093 697 SUPERFAMILY FMN-linked oxidoreductases 345 658 - -
Psa5g0093 697 CDD DUS_like_FMN 345 580 IPR035587 -
Psa5g0093 697 Gene3D - 76 155 - -
Psa5g0093 697 Gene3D Aldolase class I 341 583 IPR013785 -
Psa5g0093 697 MobiDBLite consensus disorder prediction 34 87 - -
Psa5g0093 697 ProSiteProfiles Zinc finger C3H1-type profile. 81 112 IPR000571 GO:0046872
Psa5g0093 697 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g0093 697 Pfam CCCH-type zinc finger 86 110 IPR041367 -
Psa5g0093 697 Coils Coil 62 82 - -
Psa5g0093 697 Pfam Dihydrouridine synthase (Dus) 348 582 IPR035587 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g0093 Dus 3.3e-48 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0093 K05544 - gmx:100783494 1056.59