Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0091 ATGTTGCACTGTTTGAATGCTTCCGGGAATTTACCTACTGAGAGTTGTTCATCCGACATAACAGTGCAGGAAAGACAAACCGAAAGGATGAAGTGGCAACAACAACAAGATCAAGGTTACTTCAACACTGCTATGTTTTGTTCTTCTGTTCAACAAGTTCAGAATTCTCAAGATTTAGTGGCTCTTCAAATTCCATCGGCAATTTCAAGAACTTTCAGCTCTCCACCTGTTCTCGTCGATGCCAAATTCGTTGACTCCCCGATCGAGAAAGAGAATTGTTCTAAGAAGAGGAAATCTGAAAAGGCACATCATAATCATAAGCTCAAGGTTGTTGATGAAATTGAGAACAAAGAAAAGAGGATTAAACTAGGTGCTGAAGACGGTGAATCGAAAATCACAGGGTACCCTAGCACCAAAAAGAATATAAATAGCAACAAGAGTAACAAAGAAAACTATGCAGGAGAAGGTAGTTCAAACTCAAAGGGAAATTCAAAAGCTTCCGAGGCTCAAAAACTTGACTACATTCATGTTCGAGCGCGTCGCGGCCAAGCCACCGATAGTCATAGTTTAGCCGAAAGAGTTAGAAGGGAAAAGATTAGTGAAAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATTATCAATTATGTTCAATCTCTTCAAAAACAAGTTGAGTTCTTGTCCATGAAATTAGCTACGGTTAATCCCAGGCTTGATTTCAATATTGATGATTTGTTTGAAAAAGAGGTGTTTCCAACTTGTGATGCAAATGCAAATTTTCATGTAATGGGAATTTCATCAGAATTGAGTAATACCAATCCATATCTTCAGTTCAATTCACCACACCAATTTGTTTCTTATGGTGGATTAGATACTGGAATGAACCCTATAGATATGGGGCTAAAAAGAAGCATAAGTGCCCCTGTATCCATTCCAGAGACTTTCATTGATTCTTCTTCTTTTCATCAAATTCTACCATCTACAACATGGGAAGGTGATTTCCAAAACCTTTACAACATGAATTTTGATCAAGCAAGAGCAGCTTCTTTTCCTTCTCAATCTCAGTTTTACACAGGTCTAGTTGAAGCTAGCAATCTAAAGATCGAGATGCAGTAG 1155 0.3792 MLHCLNASGNLPTESCSSDITVQERQTERMKWQQQQDQGYFNTAMFCSSVQQVQNSQDLVALQIPSAISRTFSSPPVLVDAKFVDSPIEKENCSKKRKSEKAHHNHKLKVVDEIENKEKRIKLGAEDGESKITGYPSTKKNINSNKSNKENYAGEGSSNSKGNSKASEAQKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEFLSMKLATVNPRLDFNIDDLFEKEVFPTCDANANFHVMGISSELSNTNPYLQFNSPHQFVSYGGLDTGMNPIDMGLKRSISAPVSIPETFIDSSSFHQILPSTTWEGDFQNLYNMNFDQARAASFPSQSQFYTGLVEASNLKIEMQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0091 384 SMART finulus 189 239 IPR011598 GO:0046983
Psa5g0091 384 MobiDBLite consensus disorder prediction 134 167 - -
Psa5g0091 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983
Psa5g0091 384 MobiDBLite consensus disorder prediction 132 168 - -
Psa5g0091 384 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
Psa5g0091 384 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 54 362 - -
Psa5g0091 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 252 IPR036638 GO:0046983
Psa5g0091 384 Gene3D - 180 253 IPR036638 GO:0046983
Psa5g0091 384 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 362 IPR024097 GO:0006355
Psa5g0091 384 CDD bHLH_AtBPE_like 173 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0091 Psa-Chr5 5008149 5011391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0091 168 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 52.551 8.90e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g0091 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0091 - - gmx:100798855 408.683