Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0080 ATGGGTTTCCTTTTACCTGCTGCTATTAGATGGTCTTCACATCGCAGTATCAAAACATCGTCAAAGGTATCAAACGTGCCCAAGGGCTATGTTGCGGTGTACGTCGGAGAGGAAATGAAGCGGTTTGTCATCCCCATTTCATACTTGAACCAACCTTTATTTCAAAACCTGTTGAGTCAAGCAGAGGAAGAATTCGGATATGATCATCCAATGGGCGGCCTCACAATTCCTTGCAGAGAAGATGTTTTCTTGGACATTACTTCTCAGTTCAATAGCCTATAA 282 0.4291 MGFLLPAAIRWSSHRSIKTSSKVSNVPKGYVAVYVGEEMKRFVIPISYLNQPLFQNLLSQAEEEFGYDHPMGGLTIPCREDVFLDITSQFNSL* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0080 93 Pfam Auxin responsive protein 15 87 IPR003676 GO:0009733
Psa5g0080 93 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 91 IPR003676 GO:0009733
Psa5g0080 93 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0080 Psa-Chr5 3890051 3890332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0080 25 83 Calmodulin-binding Proteins AT3G43120 57.627 2.65e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0080 K14488 - gmx:100806671 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0080 5 3890051 3890332 Psa5g0080 5 3890051 3890332 ECH