Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0073 ATGGAGGGTGAAGTGAGGAATTGGTGTTTGGAATACCTCGTTAGAAACTCAACCATAGAAACCAACATCATCAACAAACTCATTTCTAGTATCTCACTCTCCAACACCGATTACCGCACCAAGAAAACAATCATCCTCAGAACCCTCGAAGACTCCTTGTCGGAAGCATTTATCCCAGAATGTATGCTCCAAATTCTCGAGGTACTAGAAAAACTACTACTTCGTTGCGACTCTTCAAATTCAATCAGTGCCGCCATGAAAGCCGCTTATTGTAGCATTGCCGTTGAATCTACTCTCAAGTATCTTGAAGCAGGAACATCAAACCCTAGCTACGGCAAAGCGGTGAAGAGGATATGGAAGGGTAGGGTTCATGATATGCAGAGTGAGGGAACTAGTTTTCTGTTATCTGATGAATTGGAAAAATGGAAATGTGAGATTGAGAATTCGCTTTTGGATGGGAAAGTTATGGAGAAGCTTGCTTCCCTGCCGAATACTCGACGAGATGCGATTCGAAAGGTGCAGGCTTTTTTGGCTGAAGCCTGGGAGAATTTAGGTCCTTCTTTTCTTGAATCAGCAGCGAAGAATCAGTTGGATGCGAGTGTGGGTGTCTTGCAGATGAAGAAACAACAGGAGAAAGGTTCTTTAATGGAAATTCGGAAAGACAATGAGAAGCTTGAAGGGAAGTTTACTACTTCTGTTGATGTTGAGGAAGTGGATTTATCAACCTCTTGTAGCAAAGGCGAGTCTTTGCCGAATAACGAGGTCCCGAAGAATGGGGAATCTCTTAAATGTAGTTCTGTGGAGTTACAAAGCTTGGCCAAGGATCCTGGTTTGGTAATTGAGGACATGAATCAGGAGCCACAAATGGAAAATCGGAGTACGGATGCAAATGTACCCGACCCACAAGCTTGCCAGAGTAGTAATAATAATGAGGCTAATCTTAATGAGACAACTTCTGTTCATCAGAGTGATGCTCAGCACCCTAGCTTGATGAAACCAAATAGTACTGCCCGTACTCATGAGTGGGATGATTCGATAGATGGCTTGCAAGGAGAAACATCCTATCAGGCTAGTAAATTTAGTTTGCCTAGTCCAAGGAGGAGGAAAGTTTCTCCTTTGAAGGAGTATGAACCAAAAAACATCACAAAAAGGAGAAGACCGAAAAAATGGAGTAAATTGGAAGAGGATACTCTAAGGACTGGAGTAAACAAATTTGGCAGAGGAAACTGGAAATTAATCCTCAACGCTTTTACATTTGAAGAGAGAACTGAAGTTGATTTGAAGGACAAATGGAGAAACATGATGCGGTATGGAGGCCAATGA 1323 0.424 MEGEVRNWCLEYLVRNSTIETNIINKLISSISLSNTDYRTKKTIILRTLEDSLSEAFIPECMLQILEVLEKLLLRCDSSNSISAAMKAAYCSIAVESTLKYLEAGTSNPSYGKAVKRIWKGRVHDMQSEGTSFLLSDELEKWKCEIENSLLDGKVMEKLASLPNTRRDAIRKVQAFLAEAWENLGPSFLESAAKNQLDASVGVLQMKKQQEKGSLMEIRKDNEKLEGKFTTSVDVEEVDLSTSCSKGESLPNNEVPKNGESLKCSSVELQSLAKDPGLVIEDMNQEPQMENRSTDANVPDPQACQSSNNNEANLNETTSVHQSDAQHPSLMKPNSTARTHEWDDSIDGLQGETSYQASKFSLPSPRRRKVSPLKEYEPKNITKRRRPKKWSKLEEDTLRTGVNKFGRGNWKLILNAFTFEERTEVDLKDKWRNMMRYGGQ* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0073 440 CDD SANT_TRF 388 436 - -
Psa5g0073 440 Coils Coil 208 228 - -
Psa5g0073 440 MobiDBLite consensus disorder prediction 316 336 - -
Psa5g0073 440 MobiDBLite consensus disorder prediction 316 339 - -
Psa5g0073 440 Gene3D - 379 438 - -
Psa5g0073 440 ProSiteProfiles Myb-like domain profile. 382 435 IPR001005 -
Psa5g0073 440 PANTHER MYB TRANSCRIPTION FACTOR 2 437 - -
Psa5g0073 440 Pfam Myb-like DNA-binding domain 388 434 IPR001005 -
Psa5g0073 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 382 439 IPR017930 -
Psa5g0073 440 SUPERFAMILY Homeodomain-like 384 436 IPR009057 -
Psa5g0073 440 PANTHER MYB TRANSCRIPTION FACTOR 2 437 - -
Psa5g0073 440 SMART sant 386 437 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0073 Psa-Chr5 3460049 3462957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0073 8 435 Single Myb Histone (SMH) Gene Family AT1G15720 30.000 2.15e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g0073 Myb_DNA-binding 4.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0073 - K11111 mtr:MTR_3g116690 384.03