Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0043 ATGGAAGCAGTTTGCGGTAAAACTCTGCTTTTTGGTATCGGAGTCAATCTTAGAATTGGAGTTGGATTCAGAACCAAACCCACACACTCTCTCTTCTTCGTTTCAAACTCCACTTCCGATAGCAGCACCACCGATTCCAAACCACAGTCGCGTTTCGAGAAACTAAATTCTAACAAAAACAAACTGAGCGCTCTTATCCTTAGATCAAAGGAAAAGATAAGAAGACGCAAACAAGCAGAACAAGATGATAATTCCGCAACTGCAACACCAACACGACGCCGTTTTGGTCCTCATCCCAAAGGATGGGGAGATACTAGGGTTAAAGCATTGCCATTGCCGTTGGAGGACACCAATTTTTTCAGTCTCAAGTCCTTTAAAGACATTGGTTGCGCTGATTTCGTCATTCAATCTCTCCATAATCTCTCTTTAACTCGTCCTTCCCATATTCAAGCCATATCATTTGCTCCGGTTATTGCCGGAAAGTCTTGTATCATAGCTGATCAGAGTGGTTCGGGTAAGACATTGGCTTATCTAGTACCGATTATTCAGCGTCTCAGACAACAAGAACTAGAAGGACGTCATAAATCGTCTTCACAGGCTCCGACAGTTCTTATACTCGCGCCAACCGCCGAGTTGGCTTCTCAGGTCTTACATAATTGTCGATCAATATCAAAATCTGGAGTTCCGTTCAAATCTATGGTTGTCACCGGTGGCTTTGCACAAAAAACTCAACTTGAAAGTTTAAACCAGGGTGTTGATGTATTAGTCGCTACACCTGGTCGTTTTTTGTTCCTTATGAACGAAGGTTTCTTGCAGTTAACAAATTTAACATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGGGATGACGACTTTGAAAAGGCTCTTCAATGCTTGATTAGTTCTTCACCGGTTGACACGCAATATTTATTTGTGACTGCAACTTTACCAAAAACTGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAGCTCTCGCCTTGAAGAGATAATAGTTGATTGCAGTGGGGAAGGTGTACAAGAAAAAACACTGGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGAAGCTTGCGGAGGGAAACCGTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCGTTAAACCGTTTTGATAGAAAGGGAACTCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCGCGGCTTGCTAGTATGAAAGAATTTACCCGCCCTCCATCAAAAGAACTGTCCCAATTTATGGTCTGCACTGACAGAGCATCGCGGGGAATCGACTTCAGTGGAGTAGACCATGTAATACTTTTCGACTACCCCCGTGATCCAAGCGAATATGTACGGCGTGTTGGAAGAACAGCCCGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTAGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAACGGAAAGAAATCGGAAGGGTCATCCACTGCATGATGTACCTTCTGCTTATGAGAGTTGA 1587 0.4323 MEAVCGKTLLFGIGVNLRIGVGFRTKPTHSLFFVSNSTSDSSTTDSKPQSRFEKLNSNKNKLSALILRSKEKIRRRKQAEQDDNSATATPTRRRFGPHPKGWGDTRVKALPLPLEDTNFFSLKSFKDIGCADFVIQSLHNLSLTRPSHIQAISFAPVIAGKSCIIADQSGSGKTLAYLVPIIQRLRQQELEGRHKSSSQAPTVLILAPTAELASQVLHNCRSISKSGVPFKSMVVTGGFAQKTQLESLNQGVDVLVATPGRFLFLMNEGFLQLTNLTCAVLDEVDILFGDDDFEKALQCLISSSPVDTQYLFVTATLPKTVYSKLVEVFPDCEMVMGPSMHRISSRLEEIIVDCSGEGVQEKTLDTAFLNKKAALLKLAEGNRVPRTIVFCNKIETCRKVENALNRFDRKGTRMQVLPFHAAMTQESRLASMKEFTRPPSKELSQFMVCTDRASRGIDFSGVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLARKITERNRKGHPLHDVPSAYES* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0043 528 CDD SF2_C_DEAD 371 498 - -
Psa5g0043 528 MobiDBLite consensus disorder prediction 73 102 - -
Psa5g0043 528 Gene3D - 114 335 IPR027417 -
Psa5g0043 528 Pfam Helicase conserved C-terminal domain 371 487 IPR001650 -
Psa5g0043 528 Gene3D - 342 521 IPR027417 -
Psa5g0043 528 CDD DEADc 134 321 - -
Psa5g0043 528 SMART helicmild6 398 488 IPR001650 -
Psa5g0043 528 Pfam DEAD/DEAH box helicase 148 321 IPR011545 GO:0003676|GO:0005524
Psa5g0043 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 528 IPR001650 -
Psa5g0043 528 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 40 527 - -
Psa5g0043 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 499 IPR027417 -
Psa5g0043 528 MobiDBLite consensus disorder prediction 509 528 - -
Psa5g0043 528 SMART ultradead3 142 350 IPR014001 -
Psa5g0043 528 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 40 527 - -
Psa5g0043 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 335 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0043 Psa-Chr5 2132639 2136210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0043 122 511 Eukaryotic Initiation Factors Gene Family AT3G19760 26.154 1.28e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0043 K13179 - gmx:100780849 671.003