Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0040 ATGAAAATACCTAGCCCTACACGGAAGCAATCTGTTGGGGATCGTCACATGATCTCACCCACACGCCACAATATGTCCCGATCAGCTCGGAGGAGGAAAAACACCGGTCATTGGTGGTTGTCATCGATATCATGGAGGATGAAGAAGGATGCTGACTCATATGGCTTGACTCCTCAAACTCACCTCTCTTCCAATAGTCCCTACTACAAGGGTCTCACGGATCAATCTCTTGCTATCACTCCCACCTCTCATGAAGAAAACTACGAACACGACAGCACTGTCTCGCCATCGCTCCGGCCTCTCCTCCTTTCATCATCCCCCATCAGTAGTCCTTACTACAAAGGTCTTACGGATTATTCTCTTGTCGTCGATACTTCTTGGACTGCTACTCCTCATCCAATTCCTCATCACAGTTCATCTCTTTCTTGTTACCATGACTCTAGTCCATACTATAGGGGTCTTATTGCTCTTCCTGTTCCTGCCTCCCCCTCCTCTCTCTACTCCCTCAACATCAATTTCAACACCTCCACTACCACGTCCACTCAACCATCAACTCATGATTTTGTTGTCTTTTTAAGCCCAGAAGATCAATCACTCATGGTGACAGAGCCGGAAGCAACTTTAAACGAGGCAATGGTGTTGATCCATCCCGGTATCCAGGGGAAGCCTTTGAGGGTTAATGATCAGTCGTCATCACAAGCAACTCTGGAGGAGATGGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATAATATTGAAGGTGAGAAGCCTTTGAGGGTTAATAATGAATCGGAAACAATTCTAGAGAAAACAATTTTGGAAGATGCTGTGTTGTTGGTTGAAGAGCATACTAGGAAGCCTTTGAGGGAGGGAGTAACATCAGATTCCGAGAAAGTATTGTTACATCAAGAAAATGATGACAAAACAGATCTAGGTTTGGAGGAGATGGAATTGGTGATTGAACAAGAGAAGCCATATAGAGAGAGTGACGAATCGCAAGCTAGGAATGAGAAAACAGATTCGAAAGAGGAACTTGGAGACTTTTGGTTGGGTGGTCAAAAGACTGTTTCTGAACAAACAGTGGCACTGGAACTACCTTGTGAGCACATGTTGAAGCACACAGCTGAGGAAGGAAATCTGTATGAGTATCTGTGGGCAACCAAATACCAGCCTAAGAAATTGGGAGACTTCATCTGCAACAAAGCTAGAGCACTTGAGTTGAAAGCATTGGTAAAAGGGGGATGTGGCTGTAATCATTTTATATTCGAAGGACCCCCGAATGTAGGAAAGAGATCCATGATACGAGCTATGCTTCGAGAGGTATTTGGTGCTGACGGAGTGCAGGTCACAGAAGAATATAAAGACTTCAGCTTGAAGGGAGAAATGGTCGAAAATCTCCAACTGCGCGTGCAGAAATCACTCCATCATGTTGAGGTAAATCTCTCAGAAGCAAAGGGATATGAAAAACATGTGATTGTTGAGCTATTCAAGGAAACATATGGTAAGGTGATAAATAGCTCATTGCCTTGTAGCCCCGAAAACTGTCAAGCAATCATTTTGTACGAGGCGGAGAAGCTATCGTTAGAATCGGTGTTGTATATAAAGTGGATGGTAGAAAAGTATAAAGGGTGTAATAAGCTGTTCTTTTGTTGCTCCGATGAATCAAGGCTACAACCAATCCAATCACATTGCACCACTGTCCGTCTCTCATCACCATCAACTCAACAGATTGTCAAGATTTTGGAATATATTGTACAAGAAGAAGGAATAAAGTTATCACGCGAGTCAATCAAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGACACAAGAATGCCCTTAACGACGATGATTTAATTTTAACCGGATGGGAGTACGATATTTTGAATATTGCTAAAAACATAATCAGCGAGCAGAGTCCAAGACAGTTGTACGCCATTCGAAGAAAGCTTCAAAGTCTTATGATTCACGATGTTCCTCCTGACTTTATTTACAAGTCTTTGGTTGCACACTTAACAAGTCTAGTTGACGATTCACTGTGCTCAGAGTTTGCCAAACTCGACAAGGAGTACACCAAAGGTAGTGAAATGAAGCATTATACTGAAAACAAACAAGGAGGATCTGATGAAAAGAGCAGTGAAGTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAGTTCATGAGCTGGTACAAGAATTTGTCTAAGAGTAATGATCATATGCAACTTATTGCTGGAGTTTAA 2331 0.4204 MKIPSPTRKQSVGDRHMISPTRHNMSRSARRRKNTGHWWLSSISWRMKKDADSYGLTPQTHLSSNSPYYKGLTDQSLAITPTSHEENYEHDSTVSPSLRPLLLSSSPISSPYYKGLTDYSLVVDTSWTATPHPIPHHSSSLSCYHDSSPYYRGLIALPVPASPSSLYSLNINFNTSTTTSTQPSTHDFVVFLSPEDQSLMVTEPEATLNEAMVLIHPGIQGKPLRVNDQSSSQATLEEMDDDDDDDDDDDDDDDDDDDDDDDNIEGEKPLRVNNESETILEKTILEDAVLLVEEHTRKPLREGVTSDSEKVLLHQENDDKTDLGLEEMELVIEQEKPYRESDESQARNEKTDSKEELGDFWLGGQKTVSEQTVALELPCEHMLKHTAEEGNLYEYLWATKYQPKKLGDFICNKARALELKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGADGVQVTEEYKDFSLKGEMVENLQLRVQKSLHHVEVNLSEAKGYEKHVIVELFKETYGKVINSSLPCSPENCQAIILYEAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQIVKILEYIVQEEGIKLSRESIKKIILRSKNNLRQAIRSLEATYRHKNALNDDDLILTGWEYDILNIAKNIISEQSPRQLYAIRRKLQSLMIHDVPPDFIYKSLVAHLTSLVDDSLCSEFAKLDKEYTKGSEMKHYTENKQGGSDEKSSEVTKKNAMNYLKVEEFIAKFMSWYKNLSKSNDHMQLIAGV* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0040 776 PANTHER OS10G0574500 PROTEIN 127 764 - -
Psa5g0040 776 Coils Coil 617 637 - -
Psa5g0040 776 MobiDBLite consensus disorder prediction 235 264 - -
Psa5g0040 776 Gene3D - 646 760 - -
Psa5g0040 776 MobiDBLite consensus disorder prediction 222 275 - -
Psa5g0040 776 Gene3D - 585 645 - -
Psa5g0040 776 Gene3D - 395 584 IPR027417 -
Psa5g0040 776 MobiDBLite consensus disorder prediction 334 354 - -
Psa5g0040 776 MobiDBLite consensus disorder prediction 1 31 - -
Psa5g0040 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 632 IPR027417 -
Psa5g0040 776 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 127 764 - -
Psa5g0040 776 CDD HLD_clamp_RFC 584 642 - -
Psa5g0040 776 SUPERFAMILY post-AAA+ oligomerization domain-like 646 713 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0040 Psa-Chr5 2105948 2109942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0040 396 763 Core DNA Replication Machinery Family AT5G27740 29.839 5.45e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0040 K10756 - gmx:102664389 649.047