Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5258 ATGGAGGACCAAGAGGAACTGTTGTCGTCGTCTTCTTCCGATTTCGATTCCGATTCCGATTCCGGTGACTCTGAAATTGAAGTTGAACAGCTGAAATCTCAAAATGTAGAGGCACTCGTCAAAGGCAACCTGATCGTGAAGAGACAATCATTGCTACCGCGAGTGTTATCAGTAGGTACCAGTGGAGCCGCTGTTTGCAGAAAACCGTTCAAACCTCCTTCCGATGCTGCTTATACTAACAATCAAGACCTTTCTCGTAGGCTCTCTGCTCGCAAAAGGTTTGTCCCATGGGGTTCCACTACTCCCATTCCTATTCCTATTCCTAACCCTACACCCTCCCCTTTATTGGACTTCAATTTGAATGTCCCACTCCCCGATGAGGAACCGAAACCCTCATCTTTACCCCCTGGAATTGATCCTCTTGTACTCTGGCAACCTCCACACGAGGATCCTCCTCATTCCAGTTTCACACCGATATCAGTTGATACGTTGCTCGTTCGTTTCCTTCGTCCGCATCAGAGAGAAGGGGTTCAGTTTATGTTTGACTGTGTCGCAGGACTGTGTGACACACCTGATATCAATGGATGCATTTTGGCCGATGATATGGGTTTGGGGAAGACACTGCAGTCCATTACATTACTATACACTCTTATTTGTCAAGGCTTTCATGGGAACCCTATGGTTACAAAGGCCATCATTGTCACTCCTACCAGTCTAGTTAGCAATTGGGAAGCTGAAATCAAAAAGTGGGTTGGAGAAAGAATTCGCCTTGTTGCTCTTTGTGAAACCACACGAGAAGATGTTATCTCCGGGATAAACAGTTTTACAAGTCCCCGAAGCAATTTGCAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCGTCCAAGTTTATTGATAGTGGCTCGTGTGATCTCCTCATATGTGACGAGGCTCACAGACTGAAAAACGACCAGACAATAACAAACCGGGCATTGGCTGCTCTCCCATGCAAACGTAGAGTTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGACGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAGTATTGGGACCCATTGCACATTTTCGACGTTATTTTGAGGCGCCAATAATTTGTGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGTACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATACTAAGACGGACTAATGCGTTGTTATCAAATCATTTACCACCGAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTCATACAATCCAAAAATGTTAAACGGGTGATTAATGAAGAAGTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGAACTGCATCCGATTCTTCCCTCCAAATATGTCATCTGGAAGGTCTGGATCATGGACAGGAGGACATGGAGGCTGGGTTGAGCTTTCTGGTAAAATGCAAGTCTTGGCAAGGTTACTTGCTCAATTACGTCAGAGAACAAATGATCGCATTGTTCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCACTTAAGGCTTGATGGCGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAATGACCCATCTAAGGATGAATTTGTTTTTCTTTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTAATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAAATGTCAAAAGAAGGGTTGCAAAAGGTTATTCAGCGAGAGCAAAATGACAGCGTCGCGGCACAGGGTAACTTTCTTTCGACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAACGTCAAGTCAGATATTCATGAAAATATGCGATGCAGTCGGTGCCAAACATATGATGACCCTCAAGACACTGATGTCTTATCGACAATGATTAATAGCGAACATGATGATGATGAAACCTCTGATATAGGCGGATTTGCTGAAATTGCAGGCTGCTTAGGGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAATCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTTCCCAACCTCTGTACCAGATGGTATTCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTTACAAACCAAGTTGATGGAAAGCTGGTACCGGTTGACTCAATCAGTCCCAAAGTACAGAAAAAGGAATTACACAGGCCTAGGCGGAACGTTGAGCGAAAATCTACTCCTTTTTCTTTACATAATAAACTAGTACCACTACGTTCTGCATCTCATTCATCTTCGATCGCTTGGAAGAAGGAGGCAACGAATTGTGAAAGAATTACCAAAAAAGTTGACATAGATGTAGCATTGAACACCGAACACTCTCTTGTAAATGAAATATCAGGACAGAAAAGATCATGCCCTGCTGATATCAATGATGAGCACTCTCTTCTAAATGAAGTATCACAGAAAAAAACATGTCATGTTGTTATCAGTGATGATGATTTTGAGTAA 2775 0.4227 MEDQEELLSSSSSDFDSDSDSGDSEIEVEQLKSQNVEALVKGNLIVKRQSLLPRVLSVGTSGAAVCRKPFKPPSDAAYTNNQDLSRRLSARKRFVPWGSTTPIPIPIPNPTPSPLLDFNLNVPLPDEEPKPSSLPPGIDPLVLWQPPHEDPPHSSFTPISVDTLLVRFLRPHQREGVQFMFDCVAGLCDTPDINGCILADDMGLGKTLQSITLLYTLICQGFHGNPMVTKAIIVTPTSLVSNWEAEIKKWVGERIRLVALCETTREDVISGINSFTSPRSNLQVLIVSYETFRMHSSKFIDSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRVLLSGTPLQNDLDEFFAMVNFTNPGVLGPIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRVINEEVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFENCIRFFPPNMSSGRSGSWTGGHGGWVELSGKMQVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQNDSVAAQGNFLSTEDLRNLFTFDENVKSDIHENMRCSRCQTYDDPQDTDVLSTMINSEHDDDETSDIGGFAEIAGCLGNLKRSEKQVGNPLEEDLSSWGHHFFPTSVPDGILQASAGDEVTFVFTNQVDGKLVPVDSISPKVQKKELHRPRRNVERKSTPFSLHNKLVPLRSASHSSSIAWKKEATNCERITKKVDIDVALNTEHSLVNEISGQKRSCPADINDEHSLLNEVSQKKTCHVVISDDDFE* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5258 924 Pfam SNF2-related domain 172 478 IPR000330 GO:0005524|GO:0140658
Psa4g5258 924 Gene3D - 410 718 IPR027417 -
Psa4g5258 924 Pfam Helicase conserved C-terminal domain 529 637 IPR001650 -
Psa4g5258 924 SMART helicmild6 554 638 IPR001650 -
Psa4g5258 924 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 39 848 - -
Psa4g5258 924 PANTHER SNF2/RAD54 FAMILY MEMBER 39 848 - -
Psa4g5258 924 CDD SF2_C_SNF 521 649 - -
Psa4g5258 924 SMART ultradead3 165 368 IPR014001 -
Psa4g5258 924 MobiDBLite consensus disorder prediction 1 27 - -
Psa4g5258 924 CDD DEXHc_RAD54 169 410 - -
Psa4g5258 924 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 360 IPR014001 -
Psa4g5258 924 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 527 688 IPR001650 -
Psa4g5258 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 410 IPR027417 -
Psa4g5258 924 Gene3D - 148 409 IPR038718 -
Psa4g5258 924 Gene3D - 432 701 - -
Psa4g5258 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 793 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5258 Psa-Chr4 445851509 445869058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5258 518 696 RAD5 or RAD16-like Gene Family AT5G43530 33.889 8.05e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g5258 SNF2_N 1.1e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5258 K10875 - gmx:100781631 1362.05