Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5246 ATGGAACCTGCTGAGCTTATTTCTCAAGAATGGAGTTCTCTTAGTGGACTCTACACTGCTGAGGAATCTGACTTTATGAATCAGTTACTTGGTAACTGCTCAACCCCACAACACCTCTATCAGAACTCCAATTTAGGAACTGAATCTGCATTTTGGCCAACACATGATTCCACAATGGTTACTGTCACAAAAAATAACAACTATTCTAACTCAACTTCTGATGCTAGTTGCATCAACAATACAGTAACCAGCTTTGAGTATATTTCTATGGGACTTTCGGTAAATGGTTCCAAATTCAGTCCATATACAACACAAACTAATCAACAATTTCTAGCTAACAAGAATTTGCAGTCCCCAAAGGAACATGAAATACTAGTTTCTGAACCAGAAGAGAACACCGTAAGAAAAGAAAATTCACTGAAAAGATCTAGGAGCTCGAACGAGGTCTCCAAGAACAAGAGGAATGCTAAGTGTAGGAAGAATATGAGATGTGGTTCTAGAAGCACCGACGATCTGACCTTAAGCAGTTGTTGTTCGGAGGATGATGAGTCCAATTCTTCTCATGAACTACATGGAGGGTCATGTTCAAGTTTCAGCCAGAATGATTCTACAGCTATCAAGTTAAGTGGTAAATCAAGATCTAGTCGAGGTCCCGCTACTGATCCACAAAGCCTATATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGCTGAGAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATTAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTAAGCTCTGATGATTTGTGGATGTACTCTCCGATTGCTTACAATGGAATGAACATTGGACTGGAACTTGGTATTACCCCAGCAAAAGAAACAAAGGATATGCAATAG 927 0.3937 MEPAELISQEWSSLSGLYTAEESDFMNQLLGNCSTPQHLYQNSNLGTESAFWPTHDSTMVTVTKNNNYSNSTSDASCINNTVTSFEYISMGLSVNGSKFSPYTTQTNQQFLANKNLQSPKEHEILVSEPEENTVRKENSLKRSRSSNEVSKNKRNAKCRKNMRCGSRSTDDLTLSSCCSEDDESNSSHELHGGSCSSFSQNDSTAIKLSGKSRSSRGPATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGLELGITPAKETKDMQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5246 308 MobiDBLite consensus disorder prediction 206 229 - -
Psa4g5246 308 Gene3D - 222 276 IPR036638 GO:0046983
Psa4g5246 308 MobiDBLite consensus disorder prediction 124 155 - -
Psa4g5246 308 MobiDBLite consensus disorder prediction 124 156 - -
Psa4g5246 308 CDD bHLH_AtIND_like 219 281 - -
Psa4g5246 308 MobiDBLite consensus disorder prediction 206 221 - -
Psa4g5246 308 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 45 299 - -
Psa4g5246 308 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 299 - -
Psa4g5246 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Psa4g5246 308 SMART finulus 224 273 IPR011598 GO:0046983
Psa4g5246 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 283 IPR036638 GO:0046983
Psa4g5246 308 Pfam Helix-loop-helix DNA-binding domain 228 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5246 Psa-Chr4 445656964 445658959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5246 10 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 40.762 2.98e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g5246 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5246 - - mtr:MTR_5g005110 413.69