Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5228 ATGATTTCTACTTCAAAACAGATCTGGAAAATCTCCTACACAGTTTACATCCTGTTTGTTTTCATCACTCTATCCTCAACAACAGAAGCATCTCCAACATACAGAGGCTCTTATTGCAACGACACCACAAAATACGAACCAAACAGCACGCTATCTATAAACATCAATGTCCTCTTAAATTCTCTTACGACTAACTCTTCCCAACAACAAGACGGTTACTACATGACAATTATGGGTTTCGGCACAACTAACGCCGTTAACGGATTGTTTCTCTGTCGTGGCGACATCAACTCAAGCACTTGTGAGAAATGTGTGACTGACGCCGCTCAACAGATCAAACGGCGTTGTAACAACCAAACGGAAGCGGTTATTTGGTACGAAGAGTGTATGCTTCGTTATACCAATAAGTATTTTAAATTTTACAGTATCGAACCAAGGTTGAATCTGAAAGACGGTAAAACTGTCTCCGGCGTTGACTTTAAGTTGTTTCAAAATTCGGTGAATGATTTGTTGAAAAAGGTGGCGGTTATGGCGGCGCATTCGACGACGGCGAAGAAATTTGCTACCGGTGAAGTGGAAATCACGGGAACGTCGTTGACGGTTTATGGATTGGGGCAGTGTGTTACGGATTTGACGAGTTCTCAATGTGAGATGTGCTTAGGAATGGCGATCGGAACTTTGGCGGGGTGTTGCGGTGGTGAAGAAGGTGCAAGTGTTATGCTTGCGTCGTGTATTGTTAGATATCAACTCTATCCATTTTACAACGTAACTTCGTCTTCTTCTTCAGGAAAAAATAGAGTTGGAGCAAAAACAATTGTCATCATAATTTTCATTGCTTTTCTTTTGGTAGTACTTATATATGTAGCCTGTTATTGCAAAAAGAGACAATCAAGGCAGAGACGTAGGACAATGCTAAAGGAAAATTTTGGGGATGAACTAAAAACACTTGAGTCATTACAATTCAAGTTTGCTACAATTGAAGCTGCCACCAACAAATTTTCAAAGGAGAATGAAATAGGTAAAGGAGGATTTGGTGTTGTCTACAAGGGTGTTCTTTCTGATGGACAACAAATAGCAGTAAAGAAACTTTCAATAAATTCAGGACAAGGTTCTATAGAGTTTCAAAATGAAATATTACTCATAGCCAAGCTTCAACACATAAATTTGGTGACTTTGTTAGGATTCTGTTTGGAAGAACGAGAGAAAATGCTTATATATGAGTATGTGCCTAATAAAAGTCTTGATTATTTTCTATTTGATCATAAGAAACACAGGGTGTTATATTGGTTCGAGCGTTACAAAATTATAGAAGGAATTGCAAGAGGGATTCTTTACTTGCACGAGTATTCAAGACTTAAAGTCATACATCGAGATCTCAAATCTAGCAATATACTCTTAGATGATAATATGAATTCAAAAATATCTGATTTCGGTTTGGCAAGAATGGTTACAATTGATCAAGAACCGGGAAAAACTAACAGAATTGTTGGAACATAA 1497 0.3801 MISTSKQIWKISYTVYILFVFITLSSTTEASPTYRGSYCNDTTKYEPNSTLSININVLLNSLTTNSSQQQDGYYMTIMGFGTTNAVNGLFLCRGDINSSTCEKCVTDAAQQIKRRCNNQTEAVIWYEECMLRYTNKYFKFYSIEPRLNLKDGKTVSGVDFKLFQNSVNDLLKKVAVMAAHSTTAKKFATGEVEITGTSLTVYGLGQCVTDLTSSQCEMCLGMAIGTLAGCCGGEEGASVMLASCIVRYQLYPFYNVTSSSSSGKNRVGAKTIVIIIFIAFLLVVLIYVACYCKKRQSRQRRRTMLKENFGDELKTLESLQFKFATIEAATNKFSKENEIGKGGFGVVYKGVLSDGQQIAVKKLSINSGQGSIEFQNEILLIAKLQHINLVTLLGFCLEEREKMLIYEYVPNKSLDYFLFDHKKHRVLYWFERYKIIEGIARGILYLHEYSRLKVIHRDLKSSNILLDDNMNSKISDFGLARMVTIDQEPGKTNRIVGT* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5228 498 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Psa4g5228 498 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 498 - -
Psa4g5228 498 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Psa4g5228 498 Pfam Salt stress response/antifungal 161 250 IPR002902 -
Psa4g5228 498 SUPERFAMILY Protein kinase-like (PK-like) 301 498 IPR011009 -
Psa4g5228 498 ProSiteProfiles Gnk2-homologous domain profile. 143 253 IPR002902 -
Psa4g5228 498 SMART serkin_6 333 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5228 498 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 14 498 - -
Psa4g5228 498 Pfam Protein kinase domain 334 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5228 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Psa4g5228 498 Gene3D Transferase(Phosphotransferase) domain 1 409 498 - -
Psa4g5228 498 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Psa4g5228 498 Gene3D Phosphorylase Kinase; domain 1 291 408 - -
Psa4g5228 498 ProSiteProfiles Protein kinase domain profile. 333 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5228 498 Gene3D - 152 253 IPR038408 -
Psa4g5228 498 Gene3D - 32 138 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5228 Psa-Chr4 445323286 445328232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5228 9 498 Receptor kinase-like Gene Family AT4G05200 43.883 1.77e-134 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa4g5228 Pkinase 1.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5228 - - cam:101500396 714.916