Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5224 ATGGAAAAACATGTCAATATAGAAAGTGATGATGCTGATGACAACTTTGCCACATCCTCAACACTAACAACAAAATCATCATCATCAACTTCAAATAATAACATCAAACATCCAAGTTATAGAGGAGTAAGGAAGAGGAATTGGGGAAAATTTGTGTGTGAGATTCGTGAGCCAAAGAAAAAATCAAGAATATGGCTTGGGACATACCCTACAGCTGAAATGGCTGCTAGAGCACATGATGTAGCTGCTTTAGCTATAAAGGGTCATTCAGCTTATCTTAATTTCCCTCAATTAGCAAAAGCACTTCCAAGACCAATAAGCACTTCTCCAAAAGATATTCAAGATGCAGCTGCAAAAGCAGCTAATAACACTTCATTTGATGAAGCTCAAGTTGAAGCAAGACAAGAAGAACAACATTCATCACCATCTTCAATTCTTGAATCATCAAGTTCGACATTTACTAACGATGATGTTGATGCTGCATTGTTTGATTTGCCGGATCTTTTTCCTGAAGATGGAAACAATGGACTTTGTTCCTATTCTTTGAGAAATTCTACTTCGTATCTGTGTGCTGTTGAATCAACTGCTCACAGATATCATGTAGAATTTTCTGAAGATCCGTCTTTTTGGGAGAAATATTTATAG 645 0.3659 MEKHVNIESDDADDNFATSSTLTTKSSSSTSNNNIKHPSYRGVRKRNWGKFVCEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPQLAKALPRPISTSPKDIQDAAAKAANNTSFDEAQVEARQEEQHSSPSSILESSSSTFTNDDVDAALFDLPDLFPEDGNNGLCSYSLRNSTSYLCAVESTAHRYHVEFSEDPSFWEKYL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5224 214 MobiDBLite consensus disorder prediction 1 40 - -
Psa4g5224 214 MobiDBLite consensus disorder prediction 12 38 - -
Psa4g5224 214 MobiDBLite consensus disorder prediction 117 151 - -
Psa4g5224 214 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Psa4g5224 214 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Psa4g5224 214 Pfam AP2 domain 38 89 IPR001471 GO:0003700|GO:0006355
Psa4g5224 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 213 - -
Psa4g5224 214 MobiDBLite consensus disorder prediction 136 151 - -
Psa4g5224 214 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Psa4g5224 214 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Psa4g5224 214 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Psa4g5224 214 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Psa4g5224 214 PANTHER ETHYLENE RESPONSE FACTOR 22 213 - -
Psa4g5224 214 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5224 Psa-Chr4 445251050 445253027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5224 31 194 AP2-EREBP Transcription Factor Family AT2G44940 47.959 1.29e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa4g5224 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5224 - - mtr:MTR_8g006410 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5224 4 445251050 445253027 Psa4g5224 4 445251050 445253027 ECH