Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5223 ATGTTTGGGCGTGGACCAACAAGGAAGAGTGATAACACCAAATATTATGACATTCTTGGTGTTTCAAAAAGTGCCGGTGAAGATGAAATCAAGAAAGCCTATAGAAAGGCAGCGATGAAGAACCATCCCGATAAGGGTGGAGATCCTGAGAAGTTCAAGGAGTTGGGTCAAGCATATGAAGTGTTAAGTGATCCTGAAAAGAAAGAACTGTATGATCAATATGGTGAAGATGCCCTGAAAGAAGGAATGGGAGGAGGAGGAGGAAGCTCGTTTCATAATCCTTTTGATCTATTTGAATCATTTTTTGGTGGAGCTGGCTTTGGTGGTGGTGGTCCTTCAAGGGGAAGAAGACAGAAGCAAGGAGAAGATGTGGTGCATTCTTTACAAGTTTCCTTGGAGGATGTGTTTAATGGCACTACAAAGAAACTATCTCTTTCTAGGAATGTGTTGTGCGTAAAATGTAAAGGGAAAGGTTCAAAAAGTGGCACAGCTGGAAGGTGTTTTGGATGCCAAGGCACTGGTATGAAGATTACCAGAAGGCAGATTGGTCTGGGCATGATTCAACAAATGCAACACGCCTGTGTTGACTGCAAAGGAACTGGTGAGGTCATTAGTGAGAGAGATAGATGTCCTCAATGCAAGGCAAACAAGATTACTCAAGAAAAGAAGGTGCTGGAGGTGCATGTGGAAAAGGGAATGCAGCAGGGTCAAAAGATTGTATTTGAAGGACAAGCTGATGAAGCTCCGGACACAATCACCGGAGACATAGTTTTTGTCTTGCAAGTGAAAGTGCATCCAAAGTTCAAGAGGGAGCACGAGGACCTCTATATTGATCACAATCTGAGCTTAACTGAGGCTCTCTGTGGCTTCCAATTTACCGTCACACATCTTGATGGAAGGCAACTCTTGGTCAAATCAAACCCTGGAGAAGTAATCAAGCCAGGTCAATACAAAGCTATTAATGACGAGGGAATGCCACAACACAATAGGCCCTTCATGAGGGGACGCCTTTACATCAAATTTAATGTTGAATTCCCAGAATCAGGTTTTCTTTCACCTAGCCAAAGCCTGGAATTTGAGAAGATATTACCTCAAAAGACAAGCAAGAAGTTGTCGCAAAAGGAACTAGATGATTGTGAGGAGACCACCATGCATGATGTTGATATTGCAGGGGTGCATAGAAAGAAACACCAATATCGCGAGGCATATGATGATGATGACGATGAAGAGGAGCACTCAGGGCCTCGGGTACAGTGTCCGCAACAGTAG 1269 0.4366 MFGRGPTRKSDNTKYYDILGVSKSAGEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGGSSFHNPFDLFESFFGGAGFGGGGPSRGRRQKQGEDVVHSLQVSLEDVFNGTTKKLSLSRNVLCVKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGLGMIQQMQHACVDCKGTGEVISERDRCPQCKANKITQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKVHPKFKREHEDLYIDHNLSLTEALCGFQFTVTHLDGRQLLVKSNPGEVIKPGQYKAINDEGMPQHNRPFMRGRLYIKFNVEFPESGFLSPSQSLEFEKILPQKTSKKLSQKELDDCEETTMHDVDIAGVHRKKHQYREAYDDDDDEEEHSGPRVQCPQQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5223 422 SMART dnaj_3 13 67 IPR001623 -
Psa4g5223 422 PRINTS DnaJ domain signature 16 34 IPR001623 -
Psa4g5223 422 PRINTS DnaJ domain signature 47 67 IPR001623 -
Psa4g5223 422 PRINTS DnaJ domain signature 67 86 IPR001623 -
Psa4g5223 422 Gene3D - 114 263 - -
Psa4g5223 422 Gene3D - 265 347 - -
Psa4g5223 422 ProSiteProfiles Zinc finger CR-type profile. 138 222 IPR001305 GO:0031072|GO:0051082
Psa4g5223 422 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Psa4g5223 422 CDD DnaJ_zf 151 214 IPR001305 GO:0031072|GO:0051082
Psa4g5223 422 Pfam DnaJ domain 14 72 IPR001623 -
Psa4g5223 422 Hamap Chaperone protein DnaJ [dnaJ]. 11 376 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Psa4g5223 422 SUPERFAMILY HSP40/DnaJ peptide-binding domain 122 266 IPR008971 GO:0006457|GO:0051082
Psa4g5223 422 CDD DnaJ_C 122 348 - -
Psa4g5223 422 Pfam DnaJ C terminal domain 125 346 IPR002939 -
Psa4g5223 422 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Psa4g5223 422 Pfam DnaJ central domain 151 216 IPR001305 GO:0031072|GO:0051082
Psa4g5223 422 Gene3D - 151 217 - -
Psa4g5223 422 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 148 219 IPR036410 -
Psa4g5223 422 MobiDBLite consensus disorder prediction 390 422 - -
Psa4g5223 422 PANTHER CHAPERONE PROTEIN DNAJ A6 8 422 - -
Psa4g5223 422 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 422 IPR044713 GO:0006457|GO:0030544
Psa4g5223 422 SUPERFAMILY Chaperone J-domain 10 110 IPR036869 -
Psa4g5223 422 SUPERFAMILY HSP40/DnaJ peptide-binding domain 268 347 IPR008971 GO:0006457|GO:0051082
Psa4g5223 422 Gene3D DnaJ domain 11 113 IPR036869 -
Psa4g5223 422 CDD DnaJ 15 64 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5223 Psa-Chr4 445222853 445227661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5223 5 74 C2H2 Transcription Factor Family AT1G74250 39.241 2.37e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5223 4 445222853 445227661 Psa4g5223 4 445222853 445227661 ECH