Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5215 ATGGATTGCCCCAATCAACAATTTTGTTTAGAATTGAAGCTAGAAGAAAACCTGATGCAGTATCATTGGCGAAAGGATTATTATTGTCCATTCAAGGATTGCTCGGCTTTGTTGGTGAATGATGGGAAACAAGATGTTACTAGTGCAGAGTGTCCTGAGTGTCATAGGCTGTTTTGTGCACAATGCAAGGTTCCTTGGCATGGAGGAATCGACTGTGACGATTTCCAACACCAACAAAAAGTTCGAAATTACAAGGAGGTGATGAAGAAGGAGAAGGGGAAAGCAGCTGTCGTCGAGTTTGAGACGAGTAATGAGAATCCTCCACAGTCACCAAAGTTCTTTTGTGGTATATGTTATGATTTCATTATAGAGTCTCCTATTGTTAGAGGAAGTGCCACTTGCAATCACCCTTTTTGTGCCAATTGTATATCCAATCATGTGGCTGCACAACTAAGCCAGAATATAATGGAGGTTACTTGCCCAAATTCAAGCTGTTTCCAGGGGCTGAAGCCACATCATTTGCAACATATTTTACCCCAAGAAGTTGTTGTTCGATGGGCATTCGAAAGGTTCTACATTGCTAGGTAA 588 0.415 MDCPNQQFCLELKLEENLMQYHWRKDYYCPFKDCSALLVNDGKQDVTSAECPECHRLFCAQCKVPWHGGIDCDDFQHQQKVRNYKEVMKKEKGKAAVVEFETSNENPPQSPKFFCGICYDFIIESPIVRGSATCNHPFCANCISNHVAAQLSQNIMEVTCPNSSCFQGLKPHHLQHILPQEVVVRWAFERFYIAR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5215 195 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 23 85 IPR031127 GO:0004842|GO:0016567
Psa4g5215 195 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 94 188 IPR031127 GO:0004842|GO:0016567
Psa4g5215 195 SUPERFAMILY RING/U-box 110 186 - -
Psa4g5215 195 SMART ibrneu5 7 72 IPR002867 -
Psa4g5215 195 Pfam Zinc finger, C3HC4 type (RING finger) 115 161 IPR018957 GO:0046872
Psa4g5215 195 ProSiteProfiles Zinc finger RING-type profile. 115 161 IPR001841 -
Psa4g5215 195 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 94 188 - -
Psa4g5215 195 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 23 85 - -
Psa4g5215 195 Pfam IBR domain, a half RING-finger domain 27 72 IPR002867 -
Psa4g5215 195 ProSitePatterns Zinc finger RING-type signature. 134 143 IPR017907 -
Psa4g5215 195 ProSiteProfiles TRIAD supradomain profile. 1 169 IPR044066 -
Psa4g5215 195 SUPERFAMILY RING/U-box 17 77 - -
Psa4g5215 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5215 Psa-Chr4 444985500 444986491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5215 90 181 ARIADNE family AT1G05890 26.596 6.36e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5215 K11975 - egr:104437955 143.665